DRSC/TRiP Functional Genomics Resources

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Protein Alignment: tut and Syp

Sequence 1:NP_729346.1 Gene:tut FlyBaseID:FBgn0052364 Length:230 Species:Drosophila melanogaster
Sequence 2:NP_001262777.1 Gene:Syp FlyBaseID:FBgn0038826 Length:761 Species:Drosophila melanogaster

Alignment Length:167 Identity:36/168 (21%)
Similarity:80/168 (48%) Gaps:12/168 (7%)


  Fly    35 GKG-ELFLSCIPRNHSCSPRWIVEVASELGEVYIMRYKID-FSGNSRGYAYLQYINVDLKESAMQ 97
            |.| |:|...||::  .....::.:....|.::.:|..:| .:|.:||||::.:.|.:...:|::
  Fly   203 GNGCEVFCGKIPKD--MYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVR 265

  Fly    98 YLPMRFRQLCMCLRVEPSTNNRELVLKNVESSLRPWQVYQEMLKIHP--FTIVRVY----EYQLD 156
            .|.....:....:.|..|.||..|.:.|:..:....::.:|..|..|  :.:: :|    :.:.:
  Fly   266 QLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVI-IYSSPDDKKKN 329

  Fly   157 QFFYIFEYRNNDSAASAHQRV-RNSIRKFGEHAHISW 192
            :.|...||.::.:|:.|.:|: ...|:.:|....:.|
  Fly   330 RGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDW 366

Known Domains:


GeneSequenceDomainRegion External IDIdentity
tutNP_729346.1 RRM1_hnRNPR_like 36..115 CDD:240695 17/81 (21%)
DUF3388 <127..169 CDD:288701 7/48 (15%)
SypNP_001262777.1 RRM1_hnRNPR_like 205..283 CDD:240695 17/80 (21%)
RRM2_hnRNPR_like 286..367 CDD:240696 16/83 (19%)
RRM3_hnRNPR_like 381..452 CDD:240697
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_KOG0117
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
10.900

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