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Protein Alignment tut and hrpr-1

DIOPT Version :9

Sequence 1:	NP_729346.1	Gene:	tut / 317996	FlyBaseID:	FBgn0052364	Length:	230	Species:	Drosophila melanogaster
Sequence 2:	NP_493049.2	Gene:	hrpr-1 / 173086	WormBaseID:	WBGene00002000	Length:	611	Species:	Caenorhabditis elegans

Alignment Length:	250	Identity:	52/250 - (20%)
Similarity:	101/250 - (40%)	Gaps:	73/250 - (29%)

- Green bases have known domain annotations that are detailed below.

  Fly     4 ESKYCTSQV---------NGTITITTRKVLD----ENLKSLLD---------------------- 33
            :|.|.||.:         .|...:|:.|:::    ..||:||:
Worm   124 KSLYVTSLIRSFKDRCRQQGAAAVTSGKLINGPELAALKNLLETTGYTIEVTIGQRKFGGPPPDW 188

  Fly    34 -------EGKG-ELFLSCIPRNHSCSPRWIVEVASELGEVYIMRYKID-FSGNSRGYAYLQYIN- 88
                   .|:| |:::..||.:  .....:|.:..:.|:::.:|..:| .||.|||||::.|.|
Worm   189 EGPATGPAGQGHEIYVGHIPTD--VFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNK 251

  Fly    89 VDLKESAMQY--------LPMRFRQLCMCLRVEPSTNNRELVLKNVESSLRPWQVYQEMLKIHPF 145
            .|...:|..|        .|         |:|..|..|..|.:.|:..:....::.:| ||.|..
Worm   252 EDAAAAAKTYDGHEISTGKP---------LKVNVSIANTRLFIGNIPKTKSKDEILEE-LKTHAE 306

  Fly   146 TIVRVYEYQL-------DQFFYIFEYRNNDSAASAHQRV-RNSIRKFGEHAHISW 192
            .:|.|..|.:       ::.|...::.::.:|:...::: ::.||.|....::.|
Worm   307 GVVDVIVYSVPDNEKIKNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDW 361

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
tut	NP_729346.1	RRM1_hnRNPR_like	36..115	CDD:409695	23/89 (26%)
hrpr-1	NP_493049.2	NURR	61..137	CDD:410951	4/12 (33%)
hrpr-1	NP_493049.2	hnRNP-R-Q	156..>445	CDD:273732	44/217 (20%)

Information from Original Tools:

Software error:

Can't use an undefined value as an ARRAY reference at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 1034.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.