DRSC/TRiP Functional Genomics Resources

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Protein Alignment: tut and a1cf

Sequence 1:NP_729346.1 Gene:tut FlyBaseID:FBgn0052364 Length:230 Species:Drosophila melanogaster
Sequence 2:XP_002935470.2 Gene:a1cf XenbaseID:XB-GENE-952965 Length:591 Species:Xenopus tropicalis

Alignment Length:169 Identity:45/170 (26%)
Similarity:82/170 (48%) Gaps:16/170 (9%)


  Fly    38 ELFLSCIPRNHSCSPRWIVEVASELGEVYIMRYKIDFSGNSRGYAYLQYIN-VDLKESAMQ---Y 98
            |:|:..:||:  .....::.:..:.|:||.||..:||:||:||||::.:.| .|.:::..|   |
 Frog    57 EIFIGKLPRD--LFEDELIPLCEKTGKVYEMRMMMDFNGNNRGYAFVTFTNRQDARDAIKQLNNY 119

  Fly    99 LPMRFRQLCMCLRVEPSTNNRELVLKNVESSLRPWQVYQEMLKIHPFTI-VRVYEYQLDQF---- 158
            .....|.|.:|    .|.:|..|.:..:..:.|..::..||.|:....: |.||....|:.    
 Frog   120 EIRNGRLLGVC----ASVDNCRLFVGGIPKTKRREEILVEMRKVTDGVLDVIVYPSAADKSKNRG 180

  Fly   159 FYIFEYRNNDSAASAHQR-VRNSIRKFGEHAHISWLTAE 196
            |...||.::.:||.|.:: :...|:.:|....:.|...|
 Frog   181 FAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPE 219

Known Domains:


GeneSequenceDomainRegion External IDIdentity
tutNP_729346.1 RRM1_hnRNPR_like 36..115 CDD:240695 24/81 (30%)
DUF3388 <127..169 CDD:288701 11/47 (23%)
a1cfXP_002935470.2 hnRNP-R-Q 2..591 CDD:273732 45/170 (26%)
RRM1_ACF 55..132 CDD:240930 24/81 (30%)
RRM_SF 134..218 CDD:302621 19/84 (23%)
RRM3_ACF 223..305 CDD:240942
DND1_DSRM 452..528 CDD:291380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_KOG0117
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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