DRSC/TRiP Functional Genomics Resources

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Protein Alignment tut and syncrip

DIOPT Version :10

Sequence 1:NP_729346.1 Gene:tut / 317996 FlyBaseID:FBgn0052364 Length:230 Species:Drosophila melanogaster
Sequence 2:XP_002933974.2 Gene:syncrip / 100144726 XenbaseID:XB-GENE-920046 Length:623 Species:Xenopus tropicalis


Alignment Length:208 Identity:45/208 - (21%)
Similarity:90/208 - (43%) Gaps:48/208 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 ELFLSCIPRNHSCSPRWIVEVASELGEVYIMRYKID-FSGNSRGYAYLQYINVDLKESAMQYLPM 101
            |:|:..|||:  .....:|.:..:.|.::.:|..:| .:|.:||||::.:..   ||:|.:.:.:
 Frog   163 EIFVGKIPRD--LFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCT---KEAAQEAVKL 222

  Fly   102 -------RFRQLCMCLRVEPSTNNRELVLKNVESSLRPWQVYQEMLKI-HPFTIVRVY----EYQ 154
                   ..:.:.:|:.|   .||| |.:.::..|....|:.:|..|: ...|.|.:|    :.:
 Frog   223 YNNHEIRPGKHIGVCISV---ANNR-LFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKK 283

  Fly   155 LDQFFYIFEYRNNDSAASAHQRVRN-SIRKFGEHAHISW-------------------------L 193
            .::.|...||.::.:||.|.:|:.: .::.:|....:.|                         .
 Frog   284 KNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKVKVLFVRNLANT 348

  Fly   194 TAENILSRASGSF 206
            ..|.||.:|.|.|
 Frog   349 VTEEILEKAFGQF 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tutNP_729346.1 RRM1_hnRNPR_like 36..115 CDD:409695 19/84 (23%)
syncripXP_002933974.2 NURR_hnRNPQ 23..107 CDD:410954
hnRNP-R-Q 103..615 CDD:273732 45/208 (22%)
Blue background indicates that the domain is not in the aligned region.

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