Protein Alignment CG18789 and Nup42

DIOPT Version :10

• Sequence 1: NP_723704.1
• Gene: CG18789 / 317813
• FlyBaseID: FBgn0042127
• Length: 398
• Species: Drosophila melanogaster
• Sequence 2: NP_001102687.1
• Gene: Nup42 / 499974
• RGDID: 1560934
• Length: 418
• Species: Rattus norvegicus
• Alignment Length: 507
• Identity: 94/507 - (18%)
• Similarity: 142/507 - (28%)
• Gaps: 208/507 - (41%)

  Fly     1 MVVCRFFQQGSCRYGAKCNNEH------------------------------------------- 22
            |.:|:||.||.||:|.:|.|||
  Rat     1 MTICQFFLQGRCRFGDRCWNEHPGARGAAGARQPPPQQQPPSGGNRRGWNAGSQRYSNVIQPSSF 65

  Fly    23 ---------------------------------------------FDVKQYLKA---DMESSLNG 39
                                                         .|.|:.|:.   |:|...:.
  Rat    66 SKSTPWGGSRGQDKPPFGPFDSGASTSRGFGSPQNPFASPLSDEQKDEKKLLEGIVKDVEVWESS 130

  Fly    40 KMWPLSAYGPFKDKANFPNFIQDQSFEEVRFMCYEAKRQNQFEQF---SQQFNREVLEANNKMKT 101
            ..|..|.|.|.:.|.|...| .|.|.||:|...:.....|..:.:   .||...:.....|::|.
  Rat   131 GQWMFSVYSPVRKKPNISGF-TDISPEELRLEYHNFLTSNNLQSYLNSVQQLVNQWRSRINELKN 194

  Fly   102 MLQMSPQVLEMMIKIHETPEGGTVSAAPQQSSNPFAAAAPA--AANTSASIFGKPTLSAGNIF-- 162
             |.||                 |..|......:..:.||||  ..:..|..||.|.....|..
  Rat   195 -LNMS-----------------TKGALLSDLKDAVSQAAPAFGFGSKQAGTFGSPGFPVNNSSST 241

  Fly   163 -----------GNATSQASNTNSIFGGTISNANARNSIFGVGAAATGAQS----VFGQPQQQQLQ 212
                       |.||:.:.|| |:||.        :..||.|.:|..|.|    .||..:.:...
  Rat   242 TVQSFSFKTSPGLATAPSGNT-SVFGS--------HPAFGAGPSAGSAVSSSIPAFGLGKPEATS 297

  Fly   213 PAAQAFQGGNIFAQAQVQVQAQPVNPNPFGGFQQQQQQPQSTGIFGQAASQNMGGMFTQASQQLQ 277
            .|:.:|:          ..:|.......|.||    ..|.:|..||.|.:...|...........
  Rat   298 AASFSFK----------SPEASSFGSPGFSGF----PAPMATSPFGPATAPAFGSSVAAFGSPSP 348

  Fly   278 QQQQAAASGLFAQAAASAFPNQQQMQQQQQMQQQQQMQQQQMHQQQQMQQQQMQQQQQQFQMQQQ 342
            ..|.     :||:.....|..
  Rat   349 HSQT-----VFAKPCTDVFGG-------------------------------------------- 364

  Fly   343 QQMMQQQQQQAQPTNEIQSSVYSRMEDLNEQEIEAFKADQFLPGALPFKPPP 394
            ..:.......:.|.|    ::::..:.|.::|:|.|::.:|..|.:|.||||
  Rat   365 SSISSSVPASSAPDN----ALFTPRDQLTKEELEQFQSQKFTLGKIPLKPPP 412

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG18789	NP_723704.1	zf_CCCH_4	4..22	CDD:465719	10/17 (59%)
		Nucleoporin_FG	149..>204	CDD:463941	18/71 (25%)
Nup42	NP_001102687.1	zf_CCCH_4	4..22	CDD:465719	10/17 (59%)
		KREPA	<206..>347	CDD:483960	37/163 (23%)