DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18262 and su(Hw)

DIOPT Version :10

Sequence 1:NP_572453.1 Gene:CG18262 / 31745 FlyBaseID:FBgn0030012 Length:469 Species:Drosophila melanogaster
Sequence 2:NP_524349.1 Gene:su(Hw) / 41740 FlyBaseID:FBgn0003567 Length:941 Species:Drosophila melanogaster


Alignment Length:493 Identity:120/493 - (24%)
Similarity:173/493 - (35%) Gaps:160/493 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 LHEELAKEASPDLEEEEEEKEEGSKR---QHY-QRAAAMKNTLVET-------REDLLDIEL--- 135
            |:|:....|:....|..:.|...|||   :|| .:|...:||..:|       .:|.:|..|   
  Fly   103 LNEKKTPSATVTAVETTKIKTSPSKRKKMEHYVLQAVKSENTKADTTVTVVTEEDDTIDFILADD 167

  Fly   136 -DWTGGEQSEHN-----ETHEEEE-GESDDDDTKDSN---------------------------- 165
             :...|....:|     .|.::|: ||..|:|.:||:                            
  Fly   168 EEVVPGRIENNNGQEIVVTEDDEDLGEDGDEDGEDSSGKGNSSQTKIKEIVEHVCGKCYKTFRRV 232

  Fly   166 -------------------------------------DTKDMLF--------------QCDQCDR 179
                                                 :.||:.|              .|..|.:
  Fly   233 QSLKKHLEFCRYDSGYHLRKADMLKNLEKIEKDAVVMEKKDICFCCSESYDTFHLGHINCPDCPK 297

  Fly   180 AYNTKRSLQSHRRLKHSE----------ANGGSLDKSASERNSKKRKGPPKVYKC---------- 224
            ::.|:.|.:.|..:.|||          ||..|....|......|.:|.|  |.|          
  Fly   298 SFKTQTSYERHIFITHSEFSDFPCSICNANLRSEALLALHEEQHKSRGKP--YACKICGKDFTRS 360

  Fly   225 --------------NE------EACNQTFRTERDLRGHRWKHTG--------IFCDICGKPFTQS 261
                          ||      :.|::.|....:||.|..:|.|        ..|..|...|...
  Fly   361 YHLKRHQKYSSCSSNETDTMSCKVCDRVFYRLDNLRSHLKQHLGTQVVKKPEYMCHTCKNCFYSL 425

  Fly   262 GNMMRHRQRHSGIKPHKCPECDATFYTQKELSSHSICHTGRMPCICEVCGRPCRDRGVLTAHMRR 326
            ..:..|.:.|:|.||..|..||..|.....|..|...|||..|..|.||.:....:.||..||:|
  Fly   426 STLNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYSCTVCNQAFAVKEVLNRHMKR 490

  Fly   327 HTGERPAKCEVCGKAFYSFHDLNVHAVSHTNLRPFVCDVCGSTFQRKKALRVHKLLHSEQRK--Y 389
            ||||||.||:.|||:|.....|..|  |.|::|||.|:.|...|:.:|.|..|...||..::  :
  Fly   491 HTGERPHKCDECGKSFIQATQLRTH--SKTHIRPFPCEQCDEKFKTEKQLERHVKTHSRTKRPVF 553

  Fly   390 ACKLCGKTFAQSGGLNAHM--RSHDP----ARVKGAVK 421
            :|..|.:.|.....|..||  ..|.|    :.::.|||
  Fly   554 SCAECKRNFRTPALLKEHMDEGKHSPKQQRSSMRSAVK 591

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18262NP_572453.1 COG5236 <222..>313 CDD:227561 32/128 (25%)
C2H2 Zn finger 224..246 CDD:275368 8/51 (16%)
C2H2 Zn finger 251..271 CDD:275368 4/19 (21%)
zf-H2C2_2 263..288 CDD:463886 9/24 (38%)
C2H2 Zn finger 279..327 CDD:275368 17/47 (36%)
zf-H2C2_2 320..342 CDD:463886 15/21 (71%)
C2H2 Zn finger 335..355 CDD:275368 7/19 (37%)
C2H2 Zn finger 363..383 CDD:275368 6/19 (32%)
zf-C2H2 389..411 CDD:395048 6/23 (26%)
C2H2 Zn finger 391..411 CDD:275368 6/21 (29%)
su(Hw)NP_524349.1 C2H2 Zn finger 292..313 CDD:275368 5/20 (25%)
COG5048 <312..517 CDD:227381 61/208 (29%)
C2H2 Zn finger 321..341 CDD:275368 4/19 (21%)
C2H2 Zn finger 350..368 CDD:275368 1/17 (6%)
C2H2 Zn finger 382..402 CDD:275368 5/19 (26%)
C2H2 Zn finger 415..435 CDD:275368 4/19 (21%)
C2H2 Zn finger 443..463 CDD:275368 6/19 (32%)
COG5048 <467..620 CDD:227381 47/127 (37%)
C2H2 Zn finger 471..491 CDD:275368 7/19 (37%)
C2H2 Zn finger 499..519 CDD:275368 8/21 (38%)
C2H2 Zn finger 525..545 CDD:275368 6/19 (32%)
C2H2 Zn finger 555..572 CDD:275368 4/16 (25%)
C2H2 Zn finger 598..615 CDD:275371
Blue background indicates that the domain is not in the aligned region.

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