DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1571 and Dync2i2

DIOPT Version :10

Sequence 1:NP_572435.1 Gene:CG1571 / 31725 FlyBaseID:FBgn0029993 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_001005542.2 Gene:Dync2i2 / 296618 RGDID:1359465 Length:537 Species:Rattus norvegicus


Alignment Length:509 Identity:112/509 - (22%)
Similarity:184/509 - (36%) Gaps:120/509 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 ERRRFGRQCRFQDRNELMVSVHPSGRQRLKYIMANP----------SEKSTQLSRQMALTVMETE 65
            |||  ||....||....:.|| ||..:.::.|...|          :|.|.| :|..|...::||
  Rat    30 ERR--GRPAPLQDETLGVASV-PSQWRSVQGIRGEPKSCQTAGIATAEASAQ-ARTHADAQVQTE 90

  Fly    66 NVTLDQHGMYHYEGGWPKE------VNFNDEEQTQRHRKKVEREDSWGEQVLSMIRTTMSVAEQN 124
            .               |:|      |:..|..:.....::||               .|.|.|.|
  Rat    91 A---------------PEEPAAVAPVSQYDTLRLAAFLRRVE---------------AMVVRELN 125

  Fly   125 NTLNIYQNFFADLPPELGHDIKMRFRARVANVFHDLWLPARQ-----LRSIEWMPNNSRQFMTQY 184
            |.   :|:...|     |:::....:.:..:..|.|..|..|     :..|.|  |.:...:.  
  Rat   126 NN---WQSHAFD-----GYEVNWTEQQQTVSCLHTLGYPPAQGQGLHVTGISW--NTTGSVLA-- 178

  Fly   185 TNHFAKGERLRPVTDEPFGGTNGFYV--WDVK----NPLKPRITYDSKQQVSLAKICPKDENNMV 243
               .|.| ||    |:...||...||  |::.    ||.:|.:..:....|......|...:::.
  Rat   179 ---CAYG-RL----DDGDWGTLKSYVCTWNLDRQGLNPHQPSVVVEVPSAVMCLAFHPIQPSHIA 235

  Fly   244 GGTGLGQVCLWGTFKGGLPI--RNCPLEVSHRETTSALCWV----HSKSNTEFYSGSLDGSIKYW 302
            ||...|:|.:|...:...|:  |....:.:|.:....:.|:    || ...:..|.:.||.:..|
  Rat   236 GGLYSGEVLVWDMSRPEDPLLWRTGLTDDTHTDPVYQVLWLPEPRHS-HRFQVLSAATDGRVLLW 299

  Fly   303 D---------TRDLKMPMQEL-----LLEPEPQERQSRMDSHGVTVLEFEYTIPVRFIIGSDMGH 353
            .         ::...:.:|:|     |.:|...|.:.     |||.:.|.......|::|::.|.
  Rat   300 RGSGAGQLRLSKGFALAVQQLPRSTKLKKPPRGETEV-----GVTSVAFSSFDSSLFVLGTEGGF 359

  Fly   354 ----VFVGNRKGMTPMET---LLAHYQLFV----GPVRSINRNPFFVKNFLVTG-DWRARIWSEE 406
                ........:|.|.:   |.|..|...    |||.|::.:||....||..| |....::| .
  Rat   360 PLKCSLAAEAAALTRMPSSVPLRAPVQFTFSPHGGPVYSVSCSPFHRNLFLSAGTDGHVHLYS-M 423

  Fly   407 VKDSPSTMYFRKNAQILCGAWSTGRCSLFVTGDINGVVDFWDLLLHHRKPIRSV 460
            ::..|.|.....:..:....||..|..:|......|.|..:||....:||..|:
  Rat   424 LQAQPLTSLQLSHKYLFAVRWSPVRPLVFAAASGEGDVQLFDLQKSSQKPTVSI 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1571NP_572435.1 WD40 210..462 CDD:475233 63/289 (22%)
WD40 repeat 229..269 CDD:293791 9/41 (22%)
WD40 repeat 277..325 CDD:293791 12/65 (18%)
WD40 repeat 332..369 CDD:293791 8/43 (19%)
WD40 repeat 379..415 CDD:293791 11/36 (31%)
WD40 repeat 422..447 CDD:293791 6/24 (25%)
Dync2i2NP_001005542.2 WD40 50..515 CDD:441893 102/486 (21%)
WD40 repeat 165..211 CDD:293791 15/57 (26%)
WD40 repeat 223..265 CDD:293791 8/41 (20%)
WD40 repeat 271..309 CDD:293791 7/38 (18%)
WD40 repeat 339..389 CDD:293791 10/49 (20%)
WD40 repeat 396..433 CDD:293791 11/37 (30%)
WD40 repeat 439..479 CDD:293791 11/39 (28%)
WD40 repeat 486..511 CDD:293791
Blue background indicates that the domain is not in the aligned region.

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