DRSC/TRiP Functional Genomics Resources

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Protein Alignment hdm and R03H10.6

DIOPT Version :8

Sequence 1:NP_572422.1 Gene:hdm / 31705 FlyBaseID:FBgn0029977 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_494733.2 Gene:R03H10.6 / 187558 WormBaseID:WBGene00019858 Length:324 Species:Caenorhabditis elegans

Alignment Length:127 Identity:23/128 (18%)
Similarity:38/128 (30%) Gaps:40/128 (31%)


  Fly    82 VVDIVGAKVMSIPFAAPGE-----------------------QRYQPQATVSCALVVNEGSGYVV 123
            :.|..|..:..:.|.|.||                       ..|....|.:|.:::.......:
 Worm    38 LTDTYGESIRCVAFGAAGEYCKRELKLNELCYVMDGKIQLKSDDYPSYTTHACEIIIFNEHNVKI 102

  Fly   124 RHDNDDFGQITILQQLLHQPIRPL----------GAVLKLADVRSGLGFPDKIIT---TNVN 172
            |.::....|..........||..|          |.|..:.|.|.    |:|:.:   |:||
 Worm   103 RQEDPATDQNVDAPPAAVTPIANLNDSVDNFKIHGRVTLMDDKRR----PEKVFSFEITDVN 160

Known Domains:


GeneSequenceDomainRegion External IDIdentity
hdmNP_572422.1 None
R03H10.6NP_494733.2 RPA_2b-aaRSs_OBF_like 7..103 CDD:299125 9/65 (14%)
RPA_2b-aaRSs_OBF_like 122..219 CDD:299125 12/44 (27%)
RPA_2b-aaRSs_OBF_like 248..>322 CDD:299125
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_COG1599
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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