DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment snz and Snx13

DIOPT Version :10

Sequence 1:NP_572421.1 Gene:snz / 31704 FlyBaseID:FBgn0029976 Length:1117 Species:Drosophila melanogaster
Sequence 2:NP_001395744.1 Gene:Snx13 / 217463 MGIID:2661416 Length:968 Species:Mus musculus


Alignment Length:1079 Identity:245/1079 - (22%)
Similarity:402/1079 - (37%) Gaps:286/1079 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 LAVIWYYPTFFLFFAFVVYSLVLVFAAVAGTVYIHYIFTTNE-----------PTPPSRVPS--- 110
            |.::.:..||..|..|.:...:|.|......|.:.|..|.:|           |...|.||.   
Mouse    15 LGIVLFLITFGPFVIFYLAFYILCFVGGGLVVTLLYGKTNSEKYLEQCEHSFLPPTSSGVPKCLE 79

  Fly   111 ---------RLLYNATKSNIFDLPKPIKNPSNLPLIFGKTVDLQLQQIIEYVLRDFMLPWLGYVV 166
                     ::....|.:||.|.|                    |||:|::.|||::..|. |.:
Mouse    80 EMKREARTIKIDRRLTGANIIDEP--------------------LQQVIQFSLRDYVQYWY-YTL 123

  Fly   167 TKPKLINDVVREDLWNAIQKIHERALRMDAAKIIAVDMVNRVTVHLEKIRIAEARAAETNTPPVF 231
            :..:.....:|:.|.||:.:...|:..:|........:|:....||...|.|:.|..|.: ..|.
Mouse   124 SDDESFLLEIRQTLQNALIQFATRSKEIDWQPYFTTRIVDDFGTHLRVFRKAQQRVTEKD-DQVK 187

  Fly   232 STNSYLADE----EKEME-----------------FLRKLCEIMVILLLPRG-YSLPPLKVLLSE 274
            .|...|.:.    |.|||                 |||.|||:::.||||.| :....::..:.|
Mouse   188 GTAEDLVETFFEVEVEMEKDVCRDLVCTSPKDEEGFLRDLCEVLLYLLLPPGDFQSKIMRYFVRE 252

  Fly   275 ILSYKIFFPMIKMLTAPDYINQKVVQNIETRLAAAAMSKRSYEYAASFEDFLKIINNSGNLEELS 339
            ||:..|..|:|..|:.||||||.|:..|.             :...::|.|:.||..|.|:.||.
Mouse   253 ILARGILLPLINQLSDPDYINQYVIWMIR-------------DSNCNYEAFMNIIKLSDNIGELE 304

  Fly   340 LIRKSIVNDLMHATTMQNLQRAKGLDPDHEDHSLSKSELTAAVRLKRY----VRQLTMAKGECEK 400
            .:|..         ..:.||..:.||...:|.:..|:::.:.:.:|:.    :::|...|   |.
Mouse   305 AVRDK---------AAEELQYLRSLDTAGDDINTIKNQINSLLFVKKVCDSRIQRLQSGK---EI 357

  Fly   401 NLAKFGWNGNYSSDIDLTLVEILNTAVGRRYFTLFLEPLKASALIGFYLAVEEIKHAHKSASHQL 465
            |..|..  .|:.....:.|..||...|..::|..:::.....|.:.|::.||..:   .:|..||
Mouse   358 NTVKLA--ANFGKLCTVPLDSILVDNVALQFFMDYMQQTGGQAHLFFWMTVEGYR---VTAQQQL 417

  Fly   466 ------------------------GTEIFYTYIRVPKS-EIQIDKH-ERKLIETFLLGDAEPDIF 504
                                    ...|:..|:....| .:.:|.: ..||.:|....|..|:||
Mouse   418 EVLSGRQRDGKQQTNQTKGLLRAAAVGIYEQYLSEKASPRVTVDDYLVAKLADTLNHEDPTPEIF 482

  Fly   505 YDIQRNV--LRTLEEKYYPPFVLSDQYRQLKEALDSNEIADPTLLMCHTIGDVQEPLADEQPGAA 567
            .||||.|  |...:|::||.|..:..|.::...||.  :.||:             ......|..
Mouse   483 DDIQRKVYELMLRDERFYPSFRQNALYVRMLAELDM--LKDPS-------------FRGSDDGDG 532

  Fly   568 DGLNGGAGGAIDVAAHTSYARRKLEQIQERIDKKNQALDALKYSVKPESKVLTILEKEMEWLKSE 632
            :..||...|:|                       |.:||.|. ||..:..|              
Mouse   533 ESFNGSPTGSI-----------------------NLSLDDLS-SVTSDDSV-------------- 559

  Fly   633 KRQTEAHLRRTDAWTEHLGKWKATIQSVEVSDEKESLQFMILVHVDEDINAPVQPTSSKNGDSGH 697
              |..|::..|                               |:.|.|..|    .:....|.|.
Mouse   560 --QLHAYISDT-------------------------------VYADYDPYA----VAGVCNDHGK 587

  Fly   698 A------NLRKRPSGISSGWVVMRSLNQVHELQRKLRHVSSNLKAI-DLPTNFKFFFLKTDRHGQ 755
            .      .:.:|.......|...|..:..|:...::.....||.:| .||.  |..|...||...
Mouse   588 TYALYAITVHRRNLNTEEMWKTYRRYSDFHDFHMRITEQFENLSSILKLPG--KKTFNNMDRDFL 650

  Fly   756 EKAKSQIQKFLNFILEDDHLNGSEA----IY--------------------TFLSPSSDHLKQSL 796
            ||.|..:..:|..:|..:.:..|.|    :|                    ||::|..:.::...
Mouse   651 EKRKKDLNAYLQLLLTPEMMKASPALAHCVYDFLENKAYSKGKGDFARKMDTFVNPLRNSMRNVS 715

  Fly   797 PSPKKSKFSLS---TLFRSDAGKAHEASKATDPFWGLQRDDEDIS----------TYLDGESGGE 848
            .:.|....||:   |....:.|:..|            |..:||.          |..|  |..|
Mouse   716 NAVKSLPDSLAEGVTKMSDNVGRMSE------------RLGQDIKQSFFKVPPLITKTD--SDPE 766

  Fly   849 AKMLAADLDSK--DSI-AEPMYALMGEIFDMGGVFKWLRKSLISFVQ----ITYGRTINRQIRES 906
            ...::|.||..  |:| ...|..||.|:||:....:|||:::.:.:|    .|||.||||:|.:.
Mouse   767 HCRVSAQLDDNVDDNIPLRVMLLLMDEVFDLKERNQWLRRNIKNLLQQLIRATYGDTINRKIVDH 831

  Fly   907 VAYLFEESMLHNYFSAILKSFWPGGVLASAYPTRSEDMREMTTTAAKALLTDHIPEVLCNLVGAQ 971
            |.::.....:.:.......:|||.|:||...|.|.:.:|..|..|.|..|...:|:.|.:::||:
Mouse   832 VDWMTSPEQVADSVKRFRDAFWPNGILAETVPCRDKAIRMRTRIAGKTKLFAIMPDELKHIIGAE 896

  Fly   972 AAKRGVLKVFDALQNPAYNKQLFYELLEILMIEFFPEIR 1010
            ..::|:|:||:..|:...|:::.|..||..:...||:.:
Mouse   897 TTRKGILRVFEMFQHNQLNRRMVYVFLEGFLETLFPQYK 935

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snzNP_572421.1 PXA 142..300 CDD:460484 54/179 (30%)
RGS_SNX25 422..531 CDD:188675 33/136 (24%)
PX_SNX25 645..788 CDD:132788 29/173 (17%)
Nexin_C 882..987 CDD:462541 35/108 (32%)
Snx13NP_001395744.1 PXA 97..284 CDD:470618 59/221 (27%)
RGS_SNX13 377..511 CDD:188674 33/136 (24%)
PX_SNX13 557..687 CDD:132783 31/182 (17%)
Nexin_C 803..911 CDD:462541 34/107 (32%)

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