DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment snz and snx13

DIOPT Version :10

Sequence 1:NP_572421.1 Gene:snz / 31704 FlyBaseID:FBgn0029976 Length:1117 Species:Drosophila melanogaster
Sequence 2:XP_002933347.2 Gene:snx13 / 100495358 XenbaseID:XB-GENE-6037458 Length:975 Species:Xenopus tropicalis


Alignment Length:1083 Identity:249/1083 - (22%)
Similarity:429/1083 - (39%) Gaps:235/1083 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 IEPEPSVTATQRLTLLATRLLRALQLNWRIIVSGITLTLLA----VIWYYPTFFLFFAFVVYSLV 81
            |..||.:....|...:...:|:|....|.....|:.|.|:.    .|:|:..:.|.|....:.:.
 Frog     2 IPKEPCLDERNRKEDVVNCILKASLSVWGWGSLGVVLFLIKFGPFAIFYFAFYILCFVGGGFVVT 66

  Fly    82 LVFAAVAGTVYIHYIFTTNEPTPPSRVPSRLLYNATKSNIFDLPKPIKNPSNLPLIFGKT-VDLQ 145
            ::|...:...|:.....:..|:..:.:|..|      ..|...|:.||....   |.|.: :|..
 Frog    67 ILFGKTSSERYLERCEHSFLPSTSTGIPKCL------EEIKREPRTIKIDRR---ITGASMIDEP 122

  Fly   146 LQQIIEYVLRDFMLPWLGYVVTKPKLINDVVREDLWNAIQKIHERALRMDAAKIIAVDMVNRVTV 210
            |||:|::.|||::..|. |.:::.:.....:|:.:.||:.:...|:..:|........:|:....
 Frog   123 LQQVIQFSLRDYVQYWY-YTLSEDESFLLEIRQTVQNALVQFSTRSKEIDWQPYFTTRLVDDFAT 186

  Fly   211 HLEKIRIAEARAAETNTPPVFSTNSYL---ADEEKEME-----------------FLRKLCEIMV 255
            ||...|.|:.:.||...........::   .:.|.|||                 .|:.|||:::
 Frog   187 HLRVFRKAQQKMAEKEDQKKDKAEDFIDTFFEVEVEMEKCVCRDLVCTSSKDEEGCLKDLCEVLL 251

  Fly   256 ILLLPRG-YSLPPLKVLLSEILSYKIFFPMIKMLTAPDYINQKVVQNIETRLAAAAMSKRSYEYA 319
            .||||.| :....::..:.||||..|..|:|..|:.||||||.::..|             ::::
 Frog   252 YLLLPPGDFQNKIMRYFVREILSRGILLPLINQLSDPDYINQYIIWMI-------------HDFS 303

  Fly   320 ASFEDFLKIINNSGNLEELSLIRKSIVNDLMHATTMQNLQRAKGLDPDHEDHSLSKSELTAAVRL 384
            .::|.|:.:|..|||:.||..:|..         ..:.||..:.||...:|.:..|:::.:.:.:
 Frog   304 CNYEAFMNVIKLSGNISELEAVRDK---------AAEELQYLRSLDTVGDDINTIKNQINSLLFV 359

  Fly   385 KRYVRQLTMAKGECEKNLAKFGWNGNYSSDIDLTLVEILNTAVGRRYFTLFLEPLKASALIGFYL 449
            |: |.:..:.:.:..|.:.......|:.....:.|.:||...|..::|..|::.....|.:.|:|
 Frog   360 KK-VCETRIQRLQSGKEIDTVKLAANFGKLCTVPLDKILVDNVALQFFMDFMQQTGGQAHLFFWL 423

  Fly   450 AVE----------EIKHA-HKSASHQLGTE----------IFYTYIRVPKS-EIQIDKH-ERKLI 491
            .||          |:.|: .:...||....          ::..|:....| .:.||.: ..||.
 Frog   424 TVEGYRVTAQQQLEVLHSRQRDGKHQTNQTKGLLKAAAFGVYEQYLSEKASPRVHIDDYLLAKLE 488

  Fly   492 ETFLLGDAEPDIFYDIQRNV--LRTLEEKYYPPFVLSDQYRQLKEALDSNEIADPTLLMCHTIGD 554
            |.....|..|:||.||||.|  :....|::||.|..:..|.::...||.                
 Frog   489 EKLNSEDPTPEIFDDIQRKVYDMMLRNERFYPSFRQNTLYIRMLAELDM---------------- 537

  Fly   555 VQEP-LADEQPGAADGLNGGAGGAIDVAAHTSYARRKLEQIQERIDKKNQALDALKYSVKPESKV 618
            ::|| ......|..:..||...|:|    |:|                   ||.|..|       
 Frog   538 LKEPSFKGSDDGDGESFNGSPNGSI----HSS-------------------LDDLTSS------- 572

  Fly   619 LTILEKEMEWLKSEKRQTEAHLRRTDAWTEHLGKWKATIQSVEVSDEKESLQFMILVHVDEDINA 683
                        .|..|..|.:..|....|| ||   |.....::.::.:|..|      ||:  
 Frog   573 ------------DELLQINAFISDTGVCNEH-GK---TYALYAITVQRRALDSM------EDM-- 613

  Fly   684 PVQPTSSKNGDSGHANLRKRPSGISSGWVVMRSLNQVHELQRKLRHVSSNLKA-IDLPTNFKFFF 747
                                       |...|..:..|:...::.....||.: :.||.  |..|
 Frog   614 ---------------------------WKTYRRYSDFHDFHMRITEQFENLASLLKLPG--KKTF 649

  Fly   748 LKTDRHGQEKAKSQIQKFLNFILEDDHLNGSEAI--YTFLSPSSDHLKQSLPSPKKSKFS----- 805
            ...|:...||.::.:..:|..:|..:.:..|.|:  |.|     |.|:....|..|..|:     
 Frog   650 NNMDKEFLEKRRNDLNAYLQLLLNPEIVKASPALAHYVF-----DFLENKAYSKGKGDFARKMDT 709

  Fly   806 ----LSTLFR--SDAGKAHEASKATDPFWGLQRDDEDISTYLDGESGGEAK-------------- 850
                |....|  |:|.|:...|.|.    |:.:..:::.. :..:.|.:.|              
 Frog   710 FVNPLRNSMRNVSNAVKSIPDSLAE----GMNKMSDNMGK-MSEKIGQDIKHSFFKAPILVPKTD 769

  Fly   851 ------MLAADLDSK--DSI-AEPMYALMGEIFDMGGVFKWLRKSLISFVQ----ITYGRTINRQ 902
                  .::|.||..  |:| ...|..||.|:||:....:|||:.:.|.:|    .|||.||||:
 Frog   770 AFPENYRVSAQLDDNVDDNIPLRVMLLLMDEVFDLKERNQWLRRQITSLLQQLIRATYGDTINRK 834

  Fly   903 IRESVAYLFEESMLHNYFSAILKSFWPGGVLASAYPTRSEDMREMTTTAAKALLTDHIPEVLCNL 967
            |.:.|.|:.....:.:|.....:||||.|:||.|...|...:|..|..|||..|.:.:|:.|.::
 Frog   835 IVDHVQYMTSPDQVADYVKQFRESFWPNGILAEASLRRDRSIRMRTRVAAKTKLLEIMPDELKHI 899

  Fly   968 VGAQAAKRGVLKVFDALQNPAYNKQLFYELLEILMIEFFPEIR 1010
            :||:..::|:|:||:..|....|::|.|..||..:...||:.:
 Frog   900 IGAETTRKGILRVFEMFQYNQLNRRLVYVFLEGFLETLFPQYK 942

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snzNP_572421.1 PXA 142..300 CDD:460484 49/178 (28%)
RGS_SNX25 422..531 CDD:188675 35/133 (26%)
PX_SNX25 645..788 CDD:132788 27/145 (19%)
Nexin_C 882..987 CDD:462541 40/108 (37%)
snx13XP_002933347.2 PXA 119..301 CDD:470618 50/195 (26%)
RGS_SNX13 396..530 CDD:188674 35/133 (26%)
PX_SNX13 576..694 CDD:132783 32/163 (20%)
Nexin_C 810..918 CDD:462541 39/107 (36%)

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