DRSC/TRiP Functional Genomics Resources

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Protein Alignment snz and lmod1

DIOPT Version :10

Sequence 1:NP_572421.1 Gene:snz / 31704 FlyBaseID:FBgn0029976 Length:1117 Species:Drosophila melanogaster
Sequence 2:XP_002939676.1 Gene:lmod1 / 100379914 XenbaseID:XB-GENE-979212 Length:550 Species:Xenopus tropicalis


Alignment Length:550 Identity:102/550 - (18%)
Similarity:176/550 - (32%) Gaps:160/550 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   482 QIDKHERKLIETFLLGDAEPDIFYDIQRNVLRTLEEKYYPPFVLSDQYRQLKEALDSNEIADPTL 546
            ::.|:.|::.|       :|||     .|:|.||.         .::..||::.||:        
 Frog     3 RVAKYRRQVSE-------DPDI-----DNLLSTLS---------PEEMEQLQKELDA-------- 38

  Fly   547 LMCHTIGDVQEPLADEQPGAADGLNGGAGGAIDVAAHTSYARRKLEQIQERIDKKNQALDALKYS 611
                         .|...|.:.||.         ...|..|..:.|..:||.:||.....|....
 Frog    39 -------------GDPDAGVSAGLR---------RDQTERASCQREAERERENKKLAQRQATTEK 81

  Fly   612 VKPESKVLTILEKEMEWLKSEKRQTEAHLRRTDAWTEHLGKWKATIQSVEVSDEKESLQFMILVH 676
            .|...||....||::|..|..:.:.:...::.:                |..|.|..        
 Frog    82 EKSTEKVKDNKEKKVEESKESRTKDQNRTKKLE----------------EPKDTKTQ-------- 122

  Fly   677 VDEDINAPVQPTSSKNGDSGHANLRKRPSGISSGWVVMRSLNQVHELQRKLRHVSSNLKAIDLPT 741
                 ...::..:.|..|...:.:|:|.....:...|.:     .:.:|.|....|..||     
 Frog   123 -----KTDLKKETPKPKDDRVSKMRERFKQEKTSSTVDK-----EKPERILSKKPSEEKA----- 172

  Fly   742 NFKFFFLKTDRHGQEKAKSQIQKFLNFILEDDHLNGSEAIYTFLSPSSDHL-KQSLPSPKKSKFS 805
                  :||...|..:.|::..      ::|......|.     .|....: ::||..|:|.:  
 Frog   173 ------MKTTEKGNTELKAERD------VKDKKREAEEK-----PPEKCQVPEKSLKKPEKPE-- 218

  Fly   806 LSTLFRSDAGKAHEASKATDPFWGLQRDDEDISTYLDGESGGEAKMLAADLDSKDSIAEPMYALM 870
                                   ||..|.:.|...|..|...|:      |..:..|.:|.....
 Frog   219 -----------------------GLSNDKKVIGKNLPNELNKES------LQQEQPIEKPANETQ 254

  Fly   871 -----GEIFDMGGVFKWLRKSLISFVQITYGRTINRQ--IRESVAYLFEESMLHNYFSAILKSFW 928
                 |:..:...:|:.|.:.:.:....|....:|..  |.......|.|::   .|:.::|.| 
 Frog   255 NQTEEGKEDESSSIFEELMEKVKNNDPETTELNVNNSDCITIETLMSFTEAL---EFNTVVKVF- 315

  Fly   929 PGGVLASAYPTRSEDMREMTTTAAKALLTDHIPEVLCNLVGAQAAKRGVLKVFDALQ-NPAYNKQ 992
                  |...||::|   ....|..|||..:......||.......:|:|.:|.||| |....:.
 Frog   316 ------SLANTRADD---HIALAIAALLKSNKIITSINLDSNHITGKGILAIFRALQHNDTLTEL 371

  Fly   993 LFYELLEILMIEFFPEIRQLRVSNSNGTKL 1022
            .|:....|...:...||.::...|:...||
 Frog   372 RFHNQRHICGGKTEMEIAKMLKENTTLLKL 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snzNP_572421.1 PXA 142..300 CDD:460484
RGS_SNX25 422..531 CDD:188675 10/48 (21%)
PX_SNX25 645..788 CDD:132788 19/142 (13%)
Nexin_C 882..987 CDD:462541 25/107 (23%)
lmod1XP_002939676.1 Tropomodulin 13..>56 CDD:460862 17/93 (18%)
PTZ00121 <62..>275 CDD:173412 50/299 (17%)
RNA1 <277..>401 CDD:444072 30/136 (22%)
Blue background indicates that the domain is not in the aligned region.

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