DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and grik5

DIOPT Version :10

Sequence 1:NP_572411.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_001315085.1 Gene:grik5 / 798791 ZFINID:ZDB-GENE-070821-6 Length:1067 Species:Danio rerio


Alignment Length:440 Identity:92/440 - (20%)
Similarity:179/440 - (40%) Gaps:68/440 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 MVVATFEHRPYVIIE-DDPKTPGGRSIHGIEGLIFRSLAERMNFT--IKLVEQKDKNRGEILPDG 277
            :::.|....|||:.: :..:..|.....|....:.|.|::.:.||  ||||:  |...|...|:|
Zfish   430 LIITTILENPYVMRKINYQEFEGNEQYEGFCVDMLRELSDILKFTYRIKLVD--DGLYGAPEPNG 492

  Fly   278 NFTGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPIVLV--VPSG---GSISPMGRLTR 337
            ::||::..:::.:.:|....|..:..|..::..|..:.:..|.::  |..|   |..|    ...
Zfish   493 SWTGMVGELINRKADLAVAAFTITSEREKVIDFSKPFMTLGISILYRVHIGRKPGYFS----FLD 553

  Fly   338 PFRYIIWSCILVSLIFGFVLICLLKITAL----------PGLR--------NLVLGRRNRLP--- 381
            ||...:|..:|::.:   .:.|:|.::|.          |.||        ...||.....|   
Zfish   554 PFSPAVWLFMLLAYL---AVSCVLFLSARLSPYEWYNPHPCLRERRDLLENQYTLGNSLWFPVGG 615

  Fly   382 FMGMWASLLGGLALYNPQRNFARYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPIKSLSEVLA 446
            ||...:.::       |:....|.:..:|...|||:.::||..|...|....|..||:|..::..
Zfish   616 FMQQGSEIM-------PRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRMEVPIESPDDLAD 673

  Fly   447 K-DYEFRIL--PALRTIFKDSMPTT-----NFH-------AVLSLEESLYRLRDEDDPGITVALL 496
            : :.::..:  .:..|.|.:|...|     |:.       .|.|.||.:.|:.:..    ...||
Zfish   674 QTNIQYGTIHGGSTMTFFMNSRYQTYQRMWNYMYSKQPSVFVKSTEEGIARVVNSK----YAFLL 734

  Fly   497 QPTVNQFDFRSGPNKRHLTVLPDPLMTAPLTFYMRPHSYFKRRIDRLIMAMMSSGIVARYRKMYM 561
            :.|:|::......|   ||.:...|.|......|...|.|:..:...::.:..:..:...::.:.
Zfish   735 ESTMNEYHRSLNCN---LTQIGGLLDTKGYGIGMPLGSPFRDELSLAVLQLQENNRLEILKRRWW 796

  Fly   562 DRIKRVSKRRNLEPKPLSIWRLSGIFVCCAGLYLVALIVFILEILTTNHR 611
            :..| ..|..:...|.|.:..:.||||......::|:.|.::|.:.:..|
Zfish   797 EGGK-CPKEEDHRAKGLGMENIGGIFVVLICGLIIAVFVAVMEFVWSTRR 845

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_572411.1 Lig_chan-Glu_bd 225..287 CDD:214911 19/64 (30%)
Lig_chan 343..592 CDD:459656 57/284 (20%)
grik5NP_001315085.1 PBP1_iGluR_Kainate_KA1_2 36..414 CDD:380616
Periplasmic_Binding_Protein_Type_2 427..797 CDD:473866 80/389 (21%)
Blue background indicates that the domain is not in the aligned region.

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