DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and gria1a

DIOPT Version :10

Sequence 1:NP_572411.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_991161.1 Gene:gria1a / 798689 ZFINID:ZDB-GENE-020125-1 Length:914 Species:Danio rerio


Alignment Length:491 Identity:94/491 - (19%)
Similarity:190/491 - (38%) Gaps:124/491 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   217 VVATFEHRPYVIIEDDPKTPGGRSIHGIEGLIFRSLAERMNFTIKLVEQKDKNRG-----EILPD 276
            :|.|....|||:::.:.:...|...:  ||           :.::|..:..|:.|     :|:.|
Zfish   408 IVTTILESPYVMLKKNHEHFTGNDKY--EG-----------YCVELAAEIAKHVGYHYILKIVAD 459

  Fly   277 GNF----------TGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPIVLVVPSGGSISP 331
            |.:          .|::..:|.|:.::.......:..|.:::..|..:.|..|.:::.......|
Zfish   460 GKYGARDAETMMWNGMVGELVYGKADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPTKSKP 524

  Fly   332 -MGRLTRPFRYIIWSCILVSLIFGFVLICLL-------------------------KITALPGLR 370
             :.....|..|.||.||:.:.|...|::.|:                         ..:|.||..
Zfish   525 GVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHADDCEDGAEENPNQPSSSSAQPGQN 589

  Fly   371 NLVLGRRNRLP------FMGMWASLLGGLAL-----YNPQRNFARYILVMWLLQTLILRAAYTGQ 424
            .....::::..      |..:|.||  |..:     .:|:....|.:..:|...|||:.::||..
Zfish   590 QQNQNQQSQEQTNEFGIFNSLWFSL--GAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTAN 652

  Fly   425 LYLLLQDVEMRSPIKSLSEVLAKDYEFRILPALRTIFKDSMPTTNF--HAVLSLEESLYRLRDED 487
            |...|....|.|||:| :|.|||..|.    |..|:  |:..|..|  .:.:::.|.::......
Zfish   653 LAAFLTVERMVSPIES-AEDLAKQTEI----AYGTL--DAGSTKEFFRRSKIAVFEKMWSYMKSA 710

  Fly   488 DPGITVA------------------LLQPTVNQFDFRSGP-----------NKRHLTVLPDPLMT 523
            ||.:.|.                  ||:.|:|::..:..|           :|.:....|   ..
Zfish   711 DPSVFVKTTDEGVMRVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATP---KG 772

  Fly   524 APLTFYMRPHSYFKRRIDRLIMAMMSSGIVARYR-KMYMDRIKRVSKRRNLEPK--PLSIWRLSG 585
            :||          :..::..::.:...|::.:.: |.:.|:.:..|...:.:.|  .||:..::|
Zfish   773 SPL----------RNPVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSKDKTSALSLSNVAG 827

  Fly   586 IFVCCAGLYLVALIVFILEIL---TTNHRRLRRAFN 618
            :|....|...:|::|.::|..   .|..||::::.|
Zfish   828 VFYILIGGLGLAMLVALVEFCYKSRTESRRMKQSIN 863

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_572411.1 Lig_chan-Glu_bd 225..287 CDD:214911 13/76 (17%)
Lig_chan 343..592 CDD:459656 62/318 (19%)
gria1aNP_991161.1 Periplasmic_Binding_Protein_type1 26..390 CDD:471960
PBP2_iGluR_AMPA_GluR1 404..806 CDD:270447 80/432 (19%)
Lig_chan 536..835 CDD:459656 62/320 (19%)
Blue background indicates that the domain is not in the aligned region.

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