DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and Grid1

DIOPT Version :10

Sequence 1:NP_572411.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_077354.1 Gene:Grid1 / 79219 RGDID:68366 Length:1009 Species:Rattus norvegicus


Alignment Length:479 Identity:86/479 - (17%)
Similarity:174/479 - (36%) Gaps:104/479 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   198 GLTKPLFPRKL-TNMHGCEMVVATFEHRPYVIIEDD----PKTPGGRSIHGIEGLIFRSLAERMN 257
            ||...|..|.: :.:.|..:.|.|....|:|::.::    ||...|.||.     :..:||:.:.
  Rat   420 GLNGSLQERPMGSRLQGLTLKVVTVLEEPFVMVAENILGQPKRYKGFSID-----VLDALAKALG 479

  Fly   258 FTIKLVEQKDKNRGEILPDGNFTGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPIVLV 322
            |..::.:..|...|..|.:.::.|::..::....:|.......:..|..::..|..|..:.:.::
  Rat   480 FKYEIYQAPDGRYGHQLHNTSWNGMIGELISKRADLAISAITITPERESVVDFSKRYMDYSVGIL 544

  Fly   323 VPSGGSISPMGRLTRPFRYIIWSCILVSL-IFGFVLICLLKITALPGLRNLVLGRRNRLPFMGMW 386
            :........:..|..||.:.:|:||..:: :.|.::..|.:|.|       |..:....|.....
  Rat   545 IKKPEEKISIFSLFAPFDFAVWACIAAAIPVVGVLIFVLNRIQA-------VRSQSATQPRPSAS 602

  Fly   387 ASL-------------LGGLALYNPQRNFARYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPI 438
            |:|             .||.:..|...  .|.::..|.|.|||:.::||..|...|....|.||:
  Rat   603 ATLHSAIWIVYGAFVQQGGESSVNSVA--MRIVMGSWWLFTLIVCSSYTANLAAFLTVSRMDSPV 665

  Fly   439 KSLSEV---------------------------LAKDYEFRILPALRTIFKD-------SMPTT- 468
            ::..::                           |.:|..|..|  .|||.|:       |.|:. 
  Rat   666 RTFQDLSKQLEMSYGTVRDSAVYEYFRAKGTNPLEQDSTFAEL--WRTISKNGGADNCVSNPSEG 728

  Fly   469 -------NFHAVLSLEESLYRLRDEDDPGITVALLQPTVNQFDFRSGPNKRHLTVLPDPLMTAPL 526
                   |:..:..:....|....:||..:                       ||:.:.:.:...
  Rat   729 IRKAKKGNYAFLWDVAVVEYAALTDDDCSV-----------------------TVIGNSISSKGY 770

  Fly   527 TFYMRPHSYFKRRIDRLIMAMMSSGIVARYRKMYMDRIKRVS----KRRNLEPKPLSIWRLSGIF 587
            ...::..|.::....:.|:.:..:|.:...::.:.....|..    .....:.|.|.:...:|:|
  Rat   771 GIALQHGSPYRDLFSQRILELQDTGDLDVLKQKWWPHTGRCDLTSHSSAQTDGKSLKLHSFAGVF 835

  Fly   588 VCCAGLYLVALIVFILEILTTNHR 611
            ...|...|:|.:|..||:...::|
  Rat   836 CILAIGLLLACLVAALELWWNSNR 859

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_572411.1 Lig_chan-Glu_bd 225..287 CDD:214911 14/65 (22%)
Lig_chan 343..592 CDD:459656 51/308 (17%)
Grid1NP_077354.1 Interaction with CBLN1. /evidence=ECO:0000250|UniProtKB:Q61627 21..436 4/15 (27%)
PBP1_iGluR_delta_1 25..425 CDD:380615 2/4 (50%)
PBP2_iGluR_delta_1 436..806 CDD:270448 70/408 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..960
Blue background indicates that the domain is not in the aligned region.

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