DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and grin2bb

DIOPT Version :10

Sequence 1:NP_572411.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_001121809.1 Gene:grin2bb / 559976 ZFINID:ZDB-GENE-061207-27 Length:1770 Species:Danio rerio


Alignment Length:476 Identity:89/476 - (18%)
Similarity:177/476 - (37%) Gaps:129/476 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   218 VATFEHRPYVIIED-DP-------------KTPGGRSIHGIEGL------------IFRSLAERM 256
            :.|.|..|:||:|| ||             |....:::.|..|:            |.:.:|:.:
Zfish   487 IVTLEEAPFVIVEDVDPLSGTCMRNTVPCRKQLKLQNLTGDSGIYIKRCCKGFCIDILKKIAKSV 551

  Fly   257 NFTIKLVEQKDKNRGEILPDGNFTGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPI-V 320
            .||..|....:...|:.: :|.:.|::..:|....::.......::.||:::..|..:....| |
Zfish   552 KFTYDLYLVTNGKHGKKI-NGTWNGMVGEVVLKNAHMAVGSLTINEERSEVIDFSVPFIETGISV 615

  Fly   321 LVVPSGGSISPMGRLTRPFRYIIWSCILVSLIFGFVLICLLKITAL------------------- 366
            :|..|.|::||...| .||...:|       :..||::.::...|:                   
Zfish   616 MVSRSNGTVSPSAFL-EPFSADVW-------VMMFVMLLIVSAVAVFVFEYFSPVGYNRCLADGR 672

  Fly   367 -PGLRNLVLGRRNRLPFMGMWASLLGGLA------LYNPQRNFARYILVMWLLQTLILRAAYTGQ 424
             ||..:..:|:       .:|  ||.||.      :.||:...::.::.:|....:|..|:||..
Zfish   673 EPGGPSFTIGK-------AIW--LLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTAN 728

  Fly   425 LYLLLQDVEMRSPIKSLSEV-------LAKDYEFRILP------ALRTIFKDSMP-TTNFHAVLS 475
            |...:...|....:..||:.       .:..:.|..:|      .:|..:|:... .|:||. .:
Zfish   729 LAAFMIQEEYVDQVTGLSDKKFQHPNDFSPPFRFGTVPNGSTERNIRNNYKEMHSYMTSFHQ-KN 792

  Fly   476 LEESLYRL--------------------RDEDDPGITVALLQPTVNQFDFRSGPNKRHLTVLPDP 520
            :.|:|:.|                    |||....:|:.      :.:.|               
Zfish   793 VNEALHSLKSGKLDAFIYDAAVLNYMAGRDEGCKLVTIG------SGYIF--------------- 836

  Fly   521 LMTAPLTFYMRPHSYFKRRIDRLIMAMMSSGIVARYRKMYMDRIKRVSKRRNLEPKPLSIWRLSG 585
             .|......::..|.:||.:|..|:.:...|.:.....:::..|.. :::..:....|.:..::|
Zfish   837 -ATTGYGIAIQKDSGWKRAVDLAILQLFGDGEMEELEALWLTGICH-NEKNEVMSSQLDVDNMAG 899

  Fly   586 IFVCCAGLYLVALIVFILEIL 606
            :|........::||.||.|.|
Zfish   900 VFYMLGAAMALSLITFIAEHL 920

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_572411.1 Lig_chan-Glu_bd 225..287 CDD:214911 18/87 (21%)
Lig_chan 343..592 CDD:459656 49/308 (16%)
grin2bbNP_001121809.1 PBP1_iGluR_NMDA_NR2 107..465 CDD:380601
PBP2_iGluR_NMDA_Nr2 482..882 CDD:270436 80/436 (18%)
NMDAR2_C 919..1770 CDD:463148 1/2 (50%)
Blue background indicates that the domain is not in the aligned region.

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