DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and gria4a

DIOPT Version :10

Sequence 1:NP_572411.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_999971.1 Gene:gria4a / 407735 ZFINID:ZDB-GENE-020125-7 Length:898 Species:Danio rerio


Alignment Length:497 Identity:94/497 - (18%)
Similarity:185/497 - (37%) Gaps:129/497 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   211 MHGCEMVVATFEHRPYVIIEDDPKTPGGRSIHGIEGLIFRSLAERMNFTIKLVEQKDKNRG---- 271
            |....::|.|....|||:::.:.:...|.  ...||           :.:.|..:..|:.|    
Zfish   406 MENRTVIVTTIMEGPYVMLKKNWEMYEGN--EQFEG-----------YCVDLASEVAKHIGIKYK 457

  Fly   272 -EILPDGNF----------TGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPIVLVVPS 325
             .|:.||.:          .|::..:|.|:..:.......:..|.:::..|..:.|..|.:::..
Zfish   458 ISIVLDGKYGARDPETKIWNGMVGELVYGKAEIAVAPLAITLVREEVIDFSKPFMSLGISIMIKK 522

  Fly   326 GGSISP-MGRLTRPFRYIIWSCILVSLIFGFVLICLLK-------ITALP--------------- 367
            .....| :.....|..|.||.||:.:.|...|::.|:.       .|..|               
Zfish   523 PQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEPEEGSDGPPSDQPPNE 587

  Fly   368 -GLRNLVLGRRNRLPFMGMWASLLGGLAL-----YNPQRNFARYILVMWLLQTLILRAAYTGQLY 426
             |:            |..:|.||  |..:     :.|:....|.:..:|...|||:.::||..|.
Zfish   588 FGI------------FNSLWFSL--GAFMQQGCDFTPRSLSGRIVGGVWWFFTLIIISSYTANLA 638

  Fly   427 LLLQDVEMRSPIKSLSEVLAKDYEFRILPALRTIFKDSMPTTNF--HAVLSLEESLYRLRDEDDP 489
            ..|....|.|||:| :|.|||..|.    |..|:  ||..|..|  .:.:::.|.::......:|
Zfish   639 AFLTVERMVSPIES-AEDLAKQTEI----AYGTL--DSGSTKEFFRRSKIAVYEKMWSYMKSAEP 696

  Fly   490 GI---TVA---------------LLQPTVNQFDFRSGP-----------NKRHLTVLPDPLMTAP 525
            .:   |.|               ||:.|:|::..:..|           :|.:....|       
Zfish   697 TVFTKTTAEGVARVRKSKGKYAFLLESTMNEYTEQRKPCDTMKVGGNLDSKGYGVATP------- 754

  Fly   526 LTFYMRPHSYFKRRIDRLIMAMMSSGIVARYR-KMYMDRIK---RVSKRRNLEPKPLSIWRLSGI 586
                  ..|.....::..::.:..:|::.:.: |.:.|:.:   :.|..::...:.||:..::|:
Zfish   755 ------KGSQLGTPVNLAVLKLSEAGVLDKLKNKWWYDKGECGPKDSGSKDKSSQALSLSNVAGV 813

  Fly   587 FVCCAGLYLVALIVFILEILTTNH---RRLRRAFNVINRYAA 625
            |....|...:|::|.::|....:.   ::|:..|:...|..|
Zfish   814 FYILVGGLGLAMLVALVEFCYKSRAEAKKLKLTFSEAMRNKA 855

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_572411.1 Lig_chan-Glu_bd 225..287 CDD:214911 13/76 (17%)
Lig_chan 343..592 CDD:459656 61/311 (20%)
gria4aNP_999971.1 PBP1_iGluR_AMPA_GluR4 23..395 CDD:380611
PBP2_iGluR_AMPA_GluR4 408..790 CDD:270445 80/428 (19%)
Blue background indicates that the domain is not in the aligned region.

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