DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and GluRIA

DIOPT Version :10

Sequence 1:NP_572411.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_476855.1 Gene:GluRIA / 38742 FlyBaseID:FBgn0004619 Length:991 Species:Drosophila melanogaster


Alignment Length:467 Identity:90/467 - (19%)
Similarity:174/467 - (37%) Gaps:99/467 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   217 VVATFEHRPYVIIEDDPKTPGGRSIHG---IEGLIFRSLAERM------NFTIKLVEQKDKNRG- 271
            :|::....||:.::   :...|.|:.|   .||.. :.||:.:      .:.|:||:  |.|.| 
  Fly   481 IVSSLLEEPYLSLK---QYTYGESLVGNDRFEGYC-KDLADMLAAQLGIKYEIRLVQ--DGNYGA 539

  Fly   272 --EILPDGNFTGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPIVLVVPSGGSISP-MG 333
              :..| |.:.|::..::..|.::.......:..|..::..|..:.:..|.:::......:| :.
  Fly   540 ENQYAP-GGWDGMVGELIRKEADIAISAMTITAERERVIDFSKPFMTLGISIMIKKPVKQTPGVF 603

  Fly   334 RLTRPFRYIIWSCILVSLI-FGFVLICLLKITALPGLRNLVLGRRNRLPFMGMWASLLGGLALYN 397
            ....|....||..:::|.: ..|||..   :|..|.....::.|............::||..|..
  Fly   604 SFLNPLSQEIWISVILSYVGVSFVLYF---VTRFPPYEWRIVRRPQADSTAQQPPGIIGGATLSE 665

  Fly   398 PQRNF----------------------------------ARYILVMWLLQTLILRAAYTGQLYLL 428
            ||.:.                                  .|....:|...|:||.::||..|...
  Fly   666 PQAHVPPVPPNEFTMLNSFWYSLAAFMQQGCDITPPSIAGRIAAAVWWFFTIILISSYTANLAAF 730

  Fly   429 LQDVEMRSPIKSLSE------------VLAKDYEF--RILPALRTIFKDSMPTTNFHAVLSLEES 479
            |....|.:|||:..:            :....:||  |....|.....:.|.....|:|.:.:|.
  Fly   731 LTVERMVAPIKTPEDLTMQTDVNYGTLLYGSTWEFFRRSQIGLHNKMWEYMNANQHHSVHTYDEG 795

  Fly   480 LYRLRDEDDPGITVALLQPTVNQF--------DFRSGPN---KRHLTVLPDPLMTAPLTFYMRPH 533
            :.|:|  ...|....|::...|::        ..:.|.|   |......|   :.:||       
  Fly   796 IRRVR--QSKGKYALLVESPKNEYVNARPPCDTMKVGRNIDTKGFGVATP---IGSPL------- 848

  Fly   534 SYFKRRIDRLIMAMMSSGIVARYR-KMYMDRIKRVSKRRNLEPKPLSIWRLSGIFVCCAGLYLVA 597
               ::|::..::.:..:|.:.|.| |.:.|:.:....:....|..||:..::||:....|..|:|
  Fly   849 ---RKRLNEAVLTLKENGELLRIRNKWWFDKTECNLDQETSTPNELSLSNVAGIYYILIGGLLLA 910

  Fly   598 LIVFILEILTTN 609
            :||.|:|....|
  Fly   911 VIVAIMEFFCRN 922

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_572411.1 Lig_chan-Glu_bd 225..287 CDD:214911 18/73 (25%)
Lig_chan 343..592 CDD:459656 57/309 (18%)
GluRIANP_476855.1 PBP1_iGluR_AMPA 41..456 CDD:380603
PBP2_iGluR_AMPA 477..879 CDD:270433 77/422 (18%)
Lig_chan 610..906 CDD:459656 57/313 (18%)
Blue background indicates that the domain is not in the aligned region.

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