DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and GluRIIE

DIOPT Version :10

Sequence 1:NP_572411.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster


Alignment Length:479 Identity:90/479 - (18%)
Similarity:180/479 - (37%) Gaps:104/479 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 MVVATFEHRPYV-IIEDDPKTPGGRSIHGIEGLIFRSLAERMNFTIKLVE--------QKDKNRG 271
            :::.:..::||. ::|...:..|.....|....:.:.||:::.|....|.        .|..|..
  Fly   423 IILLSVPNKPYAQLVETYKQLEGNSQYEGYGVDLIKELADKLGFNFTFVNGGNDYGSYNKSTNES 487

  Fly   272 EILPDGNFTGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPIVLVVPSGGSISP-MGRL 335
                    ||:|:.::.|..:|.......:..|...:..:..:.:..|.::.......:| :...
  Fly   488 --------TGMLREIMTGRADLAITDLTITSEREQALDFTIPFMNLGIAILYLKPQKATPELFTF 544

  Fly   336 TRPFRYIIW-----SCILVSLIFGFVL------------ICLLKITALPGLRNLVLGRRNRLPFM 383
            ..||...:|     |.:.|||.| |:|            .|:.:...|.  ....||.       
  Fly   545 MDPFSEEVWWFLGFSFLGVSLSF-FILGRLSPSEWDNPYPCIEEPEELE--NQFTLGN------- 599

  Fly   384 GMW---ASLLGGLALYNPQRNFARYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPIKSLSEVL 445
            .:|   .:||...:...|:....|.:...|...|||:.::||..|...|...:.:|.|.|:.: |
  Fly   600 SIWFTTGALLQQGSEIGPKALSTRTVASFWWFFTLIVVSSYTANLAAFLTIEKPQSLINSVDD-L 663

  Fly   446 AKDYEFRILPALRTIFKDSMPTTNFHAVLSLEESLYR-----------LRDEDDPGIT------- 492
            |.:.:..:..|     |.:..|.||. :.|.||...:           |.:::..|:.       
  Fly   664 ADNKDGVVYGA-----KKTGSTRNFF-MTSAEERYKKMNKFMSENPQYLTEDNMEGVNRVKTNTH 722

  Fly   493 -VALLQPTVNQFDFRSGPNKRHLTVLPDPLMTAPLTFYMR---PHSYFKRRIDRLIMAMMSSGIV 553
             ..|::.|..:::.:...|   |..:.|.|........||   ||   :.:.:..::.:...|::
  Fly   723 YAFLMESTSIEYNTKRECN---LKKIGDALDEKGYGIAMRKDWPH---RGKFNNALLELQEQGVL 781

  Fly   554 ARYRKMYMDRIKR---VSKRRNLEPKPLSIWRLSGIFV------CCAGLY-LVALIVFILEILTT 608
            .:.:..:.:.:..   .:|....:..||.:..|.|:|.      |||.|| :::.::|:::  ..
  Fly   782 EKMKNKWWNEVGTGICATKEDAPDATPLDMNNLEGVFFVLLVGSCCALLYGIISWVLFVMK--KA 844

  Fly   609 NHRR------LRRAFNVI---NRY 623
            :|.|      |:..|..:   |.|
  Fly   845 HHYRVPLRDALKEEFQFVIDFNNY 868

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_572411.1 Lig_chan-Glu_bd 225..287 CDD:214911 14/70 (20%)
Lig_chan 343..592 CDD:459656 59/299 (20%)
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 40..402 CDD:380605
PBP2_iGluR_Kainate 419..790 CDD:270432 72/397 (18%)
Lig_chan 551..824 CDD:459656 57/295 (19%)
Blue background indicates that the domain is not in the aligned region.

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