DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7c and Grik5

DIOPT Version :10

Sequence 1:NP_572411.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:XP_006228444.1 Gene:Grik5 / 24407 RGDID:2735 Length:980 Species:Rattus norvegicus


Alignment Length:445 Identity:97/445 - (21%)
Similarity:179/445 - (40%) Gaps:77/445 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 MVVATFEHRPYVIIEDDPKTPGGRSIHG---IEGL---IFRSLAERMNFTIKLVEQKDKNRGEIL 274
            :||.|....|||:     :.|..:::.|   .||.   :.|.|||.:.|..:|...:|...|...
  Rat   417 LVVTTILENPYVM-----RRPNFQALSGNERFEGFCVDMLRELAELLRFRYRLRLVEDGLYGAPE 476

  Fly   275 PDGNFTGILKMMVDGE-VNLTFVCFMYSKARSDLMLPSTSYTSFPIVLVVPSGGSISPMGR---- 334
            |:|::||::..:::.: .:|....|..:..|..::..|..:.:..|.::..     ..|||    
  Rat   477 PNGSWTGMVGELINRQKADLAVAAFTITAEREKVIDFSKPFMTLGISILYR-----VHMGRKPGY 536

  Fly   335 --LTRPFRYIIWSCILVSLIFGFVLICLLKITAL----------PGLR--------NLVLGRRNR 379
              ...||...:|..:|::.:   .:.|:|.:.|.          |.||        ...||....
  Rat   537 FSFLDPFSPAVWLFMLLAYL---AVSCVLFLAARLSPYEWYNPHPCLRARPHILENQYTLGNSLW 598

  Fly   380 LP---FMGMWASLLGGLALYNPQRNFARYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPIKSL 441
            .|   ||...:.::       |:....|.:..:|...|||:.::||..|...|....|..|::|.
  Rat   599 FPVGGFMQQGSEIM-------PRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRMEVPVESA 656

  Fly   442 SEVLAK-DYEFRILPA--LRTIFKDSMPTT-----NFHA-------VLSLEESLYRLRDEDDPGI 491
            .::..: :.|:..:.|  ..|.|::|...|     |:..       |.|.||.:.|:.:..    
  Rat   657 DDLADQTNIEYGTIHAGSTMTFFQNSRYQTYQRMWNYMQSKQPSVFVKSTEEGIARVLNSR---- 717

  Fly   492 TVALLQPTVNQFDFRSGPNKRHLTVLPDPLMTAPLTFYMRPHSYFKRRIDRLIMAMMSSGIVARY 556
            ...||:.|:|::..|...|   ||.:...|.|......|...|.|:..|...|:.:..:..:...
  Rat   718 YAFLLESTMNEYHRRLNCN---LTQIGGLLDTKGYGIGMPLGSPFRDEITLAILQLQENNRLEIL 779

  Fly   557 RKMYMDRIKRVSKRRNLEPKPLSIWRLSGIFVCCAGLYLVALIVFILEILTTNHR 611
            ::.:.:. .|..|..:...|.|.:..:.||||......::|:.|.::|.:.:..|
  Rat   780 KRKWWEG-GRCPKEEDHRAKGLGMENIGGIFVVLICGLIIAVFVAVMEFIWSTRR 833

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_572411.1 Lig_chan-Glu_bd 225..287 CDD:214911 19/67 (28%)
Lig_chan 343..592 CDD:459656 61/284 (21%)
Grik5XP_006228444.1 PBP1_iGluR_Kainate_KA1_2 23..401 CDD:380616
Periplasmic_Binding_Protein_Type_2 414..785 CDD:473866 85/394 (22%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.