DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and Gria2

DIOPT Version :10

Sequence 1:NP_572411.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_001344853.2 Gene:Gria2 / 14800 MGIID:95809 Length:901 Species:Mus musculus


Alignment Length:463 Identity:91/463 - (19%)
Similarity:176/463 - (38%) Gaps:96/463 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 MVVATFEHRPYVIIEDDPKTPGGRSIHGIEGL---IFRSLAERMNFTIKLVEQKDKNRGEILPDG 277
            :||.|....|||:::.:.:...|...:  ||.   :...:|:...|..||.         |:.||
Mouse   416 VVVTTILESPYVMMKKNHEMLEGNERY--EGYCVDLAAEIAKHCGFKYKLT---------IVGDG 469

  Fly   278 NF----------TGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPIVLVVPSGGSISP- 331
            .:          .|::..:|.|:.::.......:..|.:::..|..:.|..|.:::.......| 
Mouse   470 KYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPG 534

  Fly   332 MGRLTRPFRYIIWSCILVSLIFGFVLICLLKITALP---GLRNLVLGRRNRLP--------FMGM 385
            :.....|..|.||.||:.:.| |..::..|.....|   .......||..:..        |..:
Mouse   535 VFSFLDPLAYEIWMCIVFAYI-GVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSL 598

  Fly   386 WASLLGGLAL-----YNPQRNFARYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPIKSLSEVL 445
            |.||  |..:     .:|:....|.:..:|...|||:.::||..|...|....|.|||:| :|.|
Mouse   599 WFSL--GAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIES-AEDL 660

  Fly   446 AKDYE--------------FR-----ILPALRTIFKDSMPTTNFHAVLSLEESLYRLRDEDDPGI 491
            :|..|              ||     :...:.|..:.:.|:.   .|.:..|.:.|:|  ...|.
Mouse   661 SKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSV---FVRTTAEGVARVR--KSKGK 720

  Fly   492 TVALLQPTVNQFDFRSGP-----------NKRHLTVLPDPLMTAPLTFYMRPHSYFKRRIDRLIM 545
            ...||:.|:|::..:..|           :|.:....|             ..|..:..::..::
Mouse   721 YAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATP-------------KGSSLRTPVNLAVL 772

  Fly   546 AMMSSGIVARYR-KMYMDRIKRVSKRRNLEPK--PLSIWRLSGIFVCCAGLYLVALIVFILEILT 607
            .:...|::.:.: |.:.|:.:..:|....:.|  .||:..::|:|....|...:|::|.::|...
Mouse   773 KLSEQGVLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCY 837

  Fly   608 TNHRRLRR 615
            .:....:|
Mouse   838 KSRAEAKR 845

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_572411.1 Lig_chan-Glu_bd 225..287 CDD:214911 14/74 (19%)
Lig_chan 343..592 CDD:459656 60/297 (20%)
Gria2NP_001344853.2 PBP1_iGluR_AMPA_GluR2 28..398 CDD:380612
PBP2_iGluR_AMPA 413..794 CDD:270433 80/410 (20%)
Blue background indicates that the domain is not in the aligned region.

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