DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7c and grik5

DIOPT Version :10

Sequence 1:NP_572411.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:XP_002936446.1 Gene:grik5 / 100497490 XenbaseID:XB-GENE-953974 Length:995 Species:Xenopus tropicalis


Alignment Length:443 Identity:98/443 - (22%)
Similarity:179/443 - (40%) Gaps:74/443 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 MVVATFEHRPYVIIEDDPKTPGGRSIHGIEGLIFRSLAE-----RMNFTIKLVEQKDKNRGEILP 275
            :||.|....||::.:.:.::..|...:  ||.....|.|     |.|:.|||||  |...|...|
 Frog   421 LVVTTILENPYMMRKSNYRSLSGNDQY--EGFCAEMLMELAALLRFNYKIKLVE--DGLYGAPEP 481

  Fly   276 DGNFTGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPIVLVVPSGGSISPMGR------ 334
            :|::||::..:::.:.:|....|..:..|..::..|..:.:..|.::..     ..|||      
 Frog   482 NGSWTGMVGELINRKADLAVAAFTITAEREKVIDFSKPFMTLGISILYR-----VQMGRKPGYFS 541

  Fly   335 LTRPFRYIIWSCILVSLIFGFVLICLLKITAL----------PGLR--------NLVLGRRNRLP 381
            ...||...:|..:|::.:   .:.|:|.:.|.          |.||        ...||.....|
 Frog   542 FLDPFSPAVWLFMLLAYL---AVSCVLFLAARLSPYEWYNPHPCLRERHHILENQYTLGNSLWFP 603

  Fly   382 ---FMGMWASLLGGLALYNPQRNFARYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPIKSLSE 443
               ||...:.::       |:....|.:..:|...|||:.::||..|...|....|..||:|..:
 Frog   604 VGGFMQQGSEVM-------PRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRMEVPIESADD 661

  Fly   444 VLAK-DYEFRIL--PALRTIFKDSMPTT-----NFH-------AVLSLEESLYRLRDEDDPGITV 493
            :..: :.|:..:  .:..|.|::|...|     |:.       .|.|.||.:.|:.:..    ..
 Frog   662 LADQTNIEYGTIHGGSTMTFFQNSRYQTYQRMWNYMNSKQPSVFVKSTEEGIARVLNSR----YA 722

  Fly   494 ALLQPTVNQFDFRSGPNKRHLTVLPDPLMTAPLTFYMRPHSYFKRRIDRLIMAMMSSGIVARYRK 558
            .||:.|:|::..|...|   ||.:...|.|......|...|.::..|...|:.:..:..:...::
 Frog   723 FLLESTMNEYHRRLNCN---LTQIGGLLDTKGYGIGMPLGSPYRDEITLAILQLQENNRLEILKR 784

  Fly   559 MYMDRIKRVSKRRNLEPKPLSIWRLSGIFVCCAGLYLVALIVFILEILTTNHR 611
            .:.:..| ..|..:...|.|.:..:.||||......::|:.|.|:|.:.:..|
 Frog   785 KWWEGGK-CPKEEDHRAKGLGMENIGGIFVVLICGLIIAVFVAIMEFVWSTRR 836

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_572411.1 Lig_chan-Glu_bd 225..287 CDD:214911 20/66 (30%)
Lig_chan 343..592 CDD:459656 60/284 (21%)
grik5XP_002936446.1 PBP1_iGluR_Kainate_KA1_2 27..405 CDD:380616
Periplasmic_Binding_Protein_Type_2 418..788 CDD:473866 85/392 (22%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.