DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cph and znf296

DIOPT Version :10

Sequence 1:NP_001356899.1 Gene:Cph / 31660 FlyBaseID:FBgn0029939 Length:1254 Species:Drosophila melanogaster
Sequence 2:NP_001037784.1 Gene:znf296 / 553232 ZFINID:ZDB-GENE-050419-201 Length:636 Species:Danio rerio


Alignment Length:1227 Identity:243/1227 - (19%)
Similarity:346/1227 - (28%) Gaps:637/1227 - (51%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LSISEDHGFRSLSHSDSTENDAVATQ----DILTCGACQKAFALSDIVKFIQHKVLQCNKENYGQ 66
            ||:.:|....:|..|.|:.......:    |:||||.|.:||.|:.|:.|||||        .|.
Zfish    13 LSVMQDDPNSTLITSSSSSEQIPEPEDEGRDLLTCGQCGQAFPLAHILNFIQHK--------QGG 69

  Fly    67 CATQNPQMDRDAEEGRPLSLVNRRPSISAPISGRKSAPASAAAAVAAAAAAAAAAAAASSTASGS 131
            |.|         ...||..                                              
Zfish    70 CGT---------ARARPQG---------------------------------------------- 79

  Fly   132 RIHTPPPSPADLLADGASSTPKRLVDENDNTTPKDSETGATTLDSNAAPSSPAAIERQSSGDSSC 196
              || |||||           .|.|..:..|   ..|.|..                        
Zfish    80 --HT-PPSPA-----------SRTVQCSQGT---KVEAGYV------------------------ 103

  Fly   197 EMEEQQDRQDKQSQPKQAKVKQEPYDEEGVNHHQNQDDDDDEEMEERSLAKRPKMELVDAEANTV 261
            |:....||          :.|:||    ||.                            .|||..
Zfish   104 ELRRVTDR----------RWKEEP----GVR----------------------------VEANRA 126

  Fly   262 HTEPSNYTCSTCKTRYTSAWRLIQHVQHSHGVKIYVESPGGGATLTVATPAALNNSALALAAAAA 326
            . |||.:||..|:..::|||.|:||.|.:|.:.||.|..         ||.              
Zfish   127 E-EPSVFTCQVCQCVFSSAWNLLQHAQITHSLNIYQEDD---------TPT-------------- 167

  Fly   327 AASASGLASPQPAVSPNPAVTSSAKRSSPLGAAGSTILSTSVSSTCSNSLVNTSGGSISNTSSIG 391
                   .:.:||...:|         ..||||.:|..                           
Zfish   168 -------QTSKPAAMMDP---------RHLGAALATAF--------------------------- 189

  Fly   392 SPQQQQLQLQQQQAQQQQQRVQQQQRENLASAMAAGMRHHPLLPPPEAMHANPFQLLRMPLPPAL 456
                                    |..:|.||       .|..|||.:.|.              
Zfish   190 ------------------------QPSSLRSA-------RPHKPPPSSTHV-------------- 209

  Fly   457 AQAGNVVPTVAPLFGRPSPADHYRMEQLVSEQFRHHGFNLAAAAAAAQAQFNANGQVVGGVVSGS 521
                              |.|             ..|.|                          
Zfish   210 ------------------PRD-------------LQGLN-------------------------- 217

  Fly   522 GEPRPPSSSSSGSQRGSVPPAALPPPSLSSQQQQQQQQAVQQQQQQGAQQQLQSAQQQQQSQQQS 586
                                                                             
Zfish   218 ----------------------------------------------------------------- 217

  Fly   587 QQQQQITPGLVGGAGGSLKLEPQQMDFYSQRLRQLAGTTSPGAGSTVNSSSPSPRQKQSPHFASP 651
                                       :|..|::|| ..|..:|..|.|.||||          |
Zfish   218 ---------------------------FSMCLQRLA-EVSCSSGGVVPSPSPSP----------P 244

  Fly   652 SPSQQQQQQLATIPRPHSLTPPEKLGDASSENGSLGLILASTPRSASTPPSKTGDVSLQEPIAHC 716
            :.|          |.||                             |||...|           .
Zfish   245 AAS----------PFPH-----------------------------STPSIHT-----------A 259

  Fly   717 YSCSYCDKKFRFENNLIIHQRTHTGEKPYKCTACDFECSHIQKLMKHMRVHRSPADDQDNQDNQD 781
            :||..|.:.|:...:|..|:|||..::||.|..|....|...:|.:|||.||..|..|:.     
Zfish   260 FSCEMCGQGFQSLRSLSAHRRTHACDRPYHCGLCQLTFSQSGELARHMRSHRRSAAGQET----- 319

  Fly   782 DGSNADSLETNEADNDEDPNP---DESEEELGDGDNDPDG--DGDLDGEDEDEDELEECEDMDYK 841
                            .||:|   ||..:..|.||||..|  .|.|:.                 
Zfish   320 ----------------SDPSPASADEDRKLSGPGDNDISGGHGGSLEA----------------- 351

  Fly   842 AEDLSVSNRIDGKSQSPKTTSSGATSLVGELMDKFGLSNIAQYSEAYKQALQESGR---KEAAAA 903
                       ||.      ..||:.::..|..:....|:.:|   |::.::|..:   ::.:..
Zfish   352 -----------GKH------PGGASLILMPLQTRAADRNLLRY---YQREVEEEVQGEPQQPSPY 396

  Fly   904 AAAAAAAADNNNRGGAGAPLSDKLNGLPVAALRLRDEFAKNCNMFQQPQDGGAPSQVPLFNPFPN 968
            .:.:..:.::.:.||:|.      :|:.          :.||.. ::|:....|.          
Zfish   397 GSPSEGSLESGDTGGSGE------SGIA----------SGNCTP-KRPEREDRPQ---------- 434

  Fly   969 PFELSKRMKMDGGDWWGMSQALHRNEALFENLKLKPLGLGGANSLIQGPLLKKESRQ-------- 1025
                        |||....:|:                     .::|....:.|.||        
Zfish   435 ------------GDWEQEVEAV---------------------EIVQDWQRENERRQVTNGMGKK 466

  Fly  1026 -RNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRTG-KDVYRC 1088
             :.:.||||||.|:|.|||||||||||||:||:|.||||||||||||||||||||..| :..::|
Zfish   467 KKEEACEFCGKCFRNSSNLTVHRRSHTGERPYRCGLCSYACAQSSKLTRHMKTHGARGTRAPFQC 531

  Fly  1089 RFCDMPFSVPSTLEKHMRKCVVNQGKAAAAANAVAAAQAAQAAAQHIQAAAQQAQAVQAQAVQAQ 1153
            :.|.:||:|.:|||||::|.   .|...|:....:.:...:..:..|: ...::.:.|:.|....
Zfish   532 QLCSVPFTVYATLEKHLKKV---HGLTHASVGTYSQSSLTEYNSLGIK-LEDESISDQSGAPITM 592

  Fly  1154 AAQQSQQQQQQLSPMGVVGYPPQFVSGHNLSLPGSVSGDNDSNASSSMTGVHPISLK 1210
            .|..|..|.:||.                         :.|:....|.|...|||.|
Zfish   593 LADSSVDQTEQLK-------------------------EEDTEMRVSSTDEPPISEK 624

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CphNP_001356899.1 zf-C2H2 717..739 CDD:395048 7/21 (33%)
C2H2 Zn finger 719..739 CDD:275368 6/19 (32%)
zf-H2C2_2 731..756 CDD:463886 9/24 (38%)
C2H2 Zn finger 747..767 CDD:275368 7/19 (37%)
zf-C2H2 1029..1050 CDD:395048 16/20 (80%)
C2H2 Zn finger 1030..1050 CDD:275368 16/19 (84%)
zf-H2C2_2 1042..1067 CDD:463886 21/24 (88%)
C2H2 Zn finger 1058..1078 CDD:275368 18/19 (95%)
C2H2 Zn finger 1088..1106 CDD:275368 10/17 (59%)
znf296NP_001037784.1 C2H2 Zn finger 262..282 CDD:275368 6/19 (32%)
zf-C2H2 288..310 CDD:395048 8/21 (38%)
C2H2 Zn finger 290..310 CDD:275368 7/19 (37%)
C2H2 Zn finger 472..492 CDD:275368 16/19 (84%)
zf-C2H2 472..492 CDD:395048 16/19 (84%)
zf-H2C2_2 484..509 CDD:463886 21/24 (88%)
C2H2 Zn finger 500..520 CDD:275368 18/19 (95%)
C2H2 Zn finger 531..549 CDD:275368 10/17 (59%)

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