DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3842 and rdh12l

DIOPT Version :10

Sequence 1:NP_572316.1 Gene:CG3842 / 31576 FlyBaseID:FBgn0029866 Length:406 Species:Drosophila melanogaster
Sequence 2:NP_001009912.2 Gene:rdh12l / 494176 ZFINID:ZDB-GENE-040801-48 Length:297 Species:Danio rerio


Alignment Length:289 Identity:148/289 - (51%)
Similarity:193/289 - (66%) Gaps:4/289 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 AYRKANRIDGKVVIVTGCNTGIGKETVLELAKRGARVYMACRDPGRCEAARLDIMDRSRNQQLFN 129
            ::..|.|:|||.|::||.||||||||.::|||||||:.|||||..:.|||..::.|.|.||.:|.
Zfish    10 SWSSAARLDGKTVLITGANTGIGKETAIDLAKRGARIIMACRDMEKAEAALKEVKDSSGNQDVFI 74

  Fly   130 RTLDLGSLQSVRNFVERFKAEESRLDILINNAGVMACPRTLTADGFEQQFGVNHLGHFLLTNLLL 194
            .:|||...:|:|.|.|:...||.:::|||||||||.||...||||||.|.||||:||||||.|||
Zfish    75 SSLDLSDSKSIRGFAEKINKEEKQVNILINNAGVMVCPYGKTADGFEMQIGVNHMGHFLLTYLLL 139

  Fly   195 DRLKHSSPSRIVVVSSAAHLFGRINREDLMSEKNYSKFFGAYSQSKLANILFTLKLSTILKDTGV 259
            |.:|.|:|:||:.|||.||.:|.||.||:.|||||.| ..||.||||||:|||..|:..|:.|||
Zfish   140 DLIKRSAPARIINVSSTAHQWGTINLEDINSEKNYDK-QKAYCQSKLANVLFTRSLAKRLEGTGV 203

  Fly   260 TVNCCHPGVVRTEINRHFSGPGWMKTALQKGSLYFFKTPKAGAQTQLRLALDPQLEGSTGGYYSD 324
            |....|||||:|::.||.|.|   :.|:...:..|.||...||||.:..|:||:|:..:|.||||
Zfish   204 TAYSLHPGVVQTDLWRHLSKP---QQAVMWFTKPFTKTSVQGAQTSIYCAVDPELQTESGKYYSD 265

  Fly   325 CMRWPLFPWVRNMQTADWLWRESEKLLGL 353
            |..........:.:.|..||..|.::|.:
Zfish   266 CAPAKAAKAAMDDEVAQRLWELSCRMLNI 294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3842NP_572316.1 Rossmann-fold NAD(P)(+)-binding proteins 74..347 CDD:473865 143/272 (53%)
rdh12lNP_001009912.2 Rossmann-fold NAD(P)(+)-binding proteins 19..288 CDD:473865 143/272 (53%)

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