DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3842 and rdh10b

DIOPT Version :10

Sequence 1:NP_572316.1 Gene:CG3842 / 31576 FlyBaseID:FBgn0029866 Length:406 Species:Drosophila melanogaster
Sequence 2:NP_958488.1 Gene:rdh10b / 378722 ZFINID:ZDB-GENE-030909-7 Length:336 Species:Danio rerio


Alignment Length:275 Identity:71/275 - (25%)
Similarity:110/275 - (40%) Gaps:62/275 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 VLIFLIVLGILL--FMWLLRKCIQGPAYRKANRIDGKVVIVTGCNTGIGKETVLELAKRGARVYM 103
            |:.|.|:...:|  ..|.:|.        :...::|:|.::||..:|:|:...||.|:|  |..:
Zfish     9 VVTFKIIWSFVLAGAKWFIRP--------REKSVEGQVCVITGAGSGLGRLFALEFARR--RATL 63

  Fly   104 ACRDPGRCEAARLDIMDRSRNQQL--------------------FNRTLDLGSLQSVRNFVERFK 148
            ...|..|........|.|...:||                    :....|:...:||....|:.:
Zfish    64 VLWDINRQSNEETAEMAREIYRQLKPSTGSSDRVQELPLLQPKVYTYMCDVSKRESVYLTAEKVR 128

  Fly   149 AEESRLDILINNAGVMA------CPRTLTADGFEQQFGVNHLGHFLLTNLLLDRLKHSSPSRIVV 207
            :|...:|:|||||||::      ||..|    .|:...||...||..|...|.::...:...||.
Zfish   129 SEVGDIDLLINNAGVVSGRHLLDCPDEL----IERTMMVNCHAHFWTTKAFLPKMLELNHGHIVT 189

  Fly   208 VSSAAHLFGRINREDLMSEKNYSKFFGAYS-------QSKLAN---ILFTLKLSTILKDTGVTVN 262
            |:|:..||.....||..:.|     |||..       :.|.|:   |..|| :...|.|||:...
Zfish   190 VASSLGLFTTAGVEDYCASK-----FGAIGFHESLSHELKAADKDGIKMTL-VCPFLVDTGMFEG 248

  Fly   263 CCHPGVVRTEINRHF 277
            |    .:|.|:...|
Zfish   249 C----KIRKEMAPFF 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3842NP_572316.1 Rossmann-fold NAD(P)(+)-binding proteins 74..347 CDD:473865 65/240 (27%)
rdh10bNP_958488.1 17beta-HSDXI-like_SDR_c 38..302 CDD:187598 64/238 (27%)

Return to query results.
Submit another query.