DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3842 and sni

DIOPT Version :10

Sequence 1:NP_572316.1 Gene:CG3842 / 31576 FlyBaseID:FBgn0029866 Length:406 Species:Drosophila melanogaster
Sequence 2:NP_572466.1 Gene:sni / 31761 FlyBaseID:FBgn0030026 Length:247 Species:Drosophila melanogaster


Alignment Length:222 Identity:51/222 - (22%)
Similarity:91/222 - (40%) Gaps:44/222 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 VIVTGCNTGIG---KETVLELAKRGARVYMACRDPGRCEAARLDIMDRSRN-QQLFNRTLDLGSL 137
            :::||||.|:|   .:.:|.|.:....::..||:  |.:|..|:  |.::| ..:....:||.:.
  Fly     4 ILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRN--REQAKELE--DLAKNHSNIHILEIDLRNF 64

  Fly   138 QSVRNFVERFK--AEESRLDILINNAGVMACPRTLTADGFEQQFGVNHLGHFLLTNLLLDRLKHS 200
            .:....|...:  .::..|::|.||||:......:||               :.:..|||.|:.:
  Fly    65 DAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITA---------------VRSQELLDTLQTN 114

  Fly   201 SPSRIVVVSSAAHLF--------------GR---INREDLMS--EKNYSKFFGAYSQSKLANILF 246
            :...|::..:...|.              ||   ||...::.  :.|......||..||.|....
  Fly   115 TVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSALNAA 179

  Fly   247 TLKLSTILKDTGVTVNCCHPGVVRTEI 273
            |..||..|....:.....|||.|:|::
  Fly   180 TKSLSVDLYPQRIMCVSLHPGWVKTDM 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3842NP_572316.1 Rossmann-fold NAD(P)(+)-binding proteins 74..347 CDD:473865 51/222 (23%)
sniNP_572466.1 carb_red_sniffer_like_SDR_c 4..247 CDD:187586 51/222 (23%)

Return to query results.
Submit another query.