Protein Alignment Rpt4 and RCA

DIOPT Version :10

• Sequence 1: NP_572308.3
• Gene: Rpt4 / 31567
• FlyBaseID: FBgn0028685
• Length: 397
• Species: Drosophila melanogaster
• Sequence 2: NP_565913.1
• Gene: RCA / 818558
• AraportID: AT2G39730
• Length: 474
• Species: Arabidopsis thaliana
• Alignment Length: 331
• Identity: 73/331 - (22%)
• Similarity: 130/331 - (39%)
• Gaps: 82/331 - (24%)

  Fly    87 YVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDVTYSAIGGLTDQIR 151
            ||....||.:...:..|..:|            |..:|.||.:::
plant   114 YVSQGLRQYNLDNMMDGFYIA------------PAFMDKLVVHIT-------------------- 146

  Fly   152 ELREVIELPLLNPELFLRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYI 216
              :..:.||.:...|.|.:          :|..|.||:.....|.:::..|.:.:.:..:.....
plant   147 --KNFLTLPNIKVPLILGI----------WGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNA 199

  Fly   217 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN----- 270
            ||.|:|||:.:..|.|    .:.|.:|::::||..||.  .::.|..::.:..|||.:.:
plant   200 GEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 264

  Fly   271 QMDGF---DSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHG 332
            |:.|.   :...:|.:|...|...||...|:|.||:::...  .|..:.|:.:.|    .|.:..
plant   265 QLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRTD 323

  Fly   333 EIDYEAIVKLSDNFNGADLRNVCTEAGLF-AIRAEREYVIQEDFMK-----AVRKVSDNKKLESK 391
            :|..|.||.|.|.|.|..:       ..| |:||.   |..::..|     .|.|:  .|:|.:.
plant   324 KIKDEDIVTLVDQFPGQSI-------DFFGALRAR---VYDDEVRKFVESLGVEKI--GKRLVNS 376

  Fly   392 LDYKPV 397
            .:..||
plant   377 REGPPV 382

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpt4	NP_572308.3	PRK03992	13..387	CDD:179699	69/319 (22%)
RCA	NP_565913.1	PLN00020	8..422	CDD:215031	73/331 (22%)
		MPEG1_P2	450..>470	CDD:439345