DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt4 and psmc6

DIOPT Version :10

Sequence 1:NP_572308.3 Gene:Rpt4 / 31567 FlyBaseID:FBgn0028685 Length:397 Species:Drosophila melanogaster
Sequence 2:NP_001003832.1 Gene:psmc6 / 321585 ZFINID:ZDB-GENE-030131-304 Length:389 Species:Danio rerio


Alignment Length:390 Identity:345/390 - (88%)
Similarity:367/390 - (94%) Gaps:1/390 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 MPDNLRVKALSEYRKKLLEHKEIEGRLKEKREEIKDLTKLYDKSENDLKALQSVGQIVGEVLKQL 72
            |.:| |.|.|.:|||||||||||:|||||.||::|:|||.|:|||||||||||||||||||||||
Zfish     1 MAEN-REKGLQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQL 64

  Fly    73 TEDKFIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGD 137
            ||:||||||||||||||||||||||:|||.||||||||||||||||||||||||||||||||||.
Zfish    65 TEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGS 129

  Fly   138 VTYSAIGGLTDQIRELREVIELPLLNPELFLRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 202
            |:||.||||::|||||||||||||.|||||.||||.|||||||||||||||||||||||||||.|
Zfish   130 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCN 194

  Fly   203 FLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLME 267
            |||||||:|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Zfish   195 FLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLME 259

  Fly   268 LLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHG 332
            |||||||||:|.:|||||||||||||||||||||||||||.|.||||||||:|||||:..|.|||
Zfish   260 LLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHG 324

  Fly   333 EIDYEAIVKLSDNFNGADLRNVCTEAGLFAIRAEREYVIQEDFMKAVRKVSDNKKLESKLDYKPV 397
            :|||||||||||.||||||||||||||:|||||:.|||.|||||||||||:|:||||||||||||
Zfish   325 DIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHEYVTQEDFMKAVRKVADSKKLESKLDYKPV 389

  Fly   398  397
            Zfish   390  389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt4NP_572308.3 PRK03992 13..387 CDD:179699 331/373 (89%)
psmc6NP_001003832.1 PRK03992 4..379 CDD:179699 332/375 (89%)

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