DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt4 and rpt-6

DIOPT Version :10

Sequence 1:NP_572308.3 Gene:Rpt4 / 31567 FlyBaseID:FBgn0028685 Length:397 Species:Drosophila melanogaster
Sequence 2:NP_499609.1 Gene:rpt-6 / 176661 WormBaseID:WBGene00004506 Length:416 Species:Caenorhabditis elegans


Alignment Length:394 Identity:181/394 - (45%)
Similarity:253/394 - (64%) Gaps:13/394 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TATPMPDNLRVKALSEY--------RKKLLEHKEIEGRLKEKREEIKDLTKLYDKSENDLKALQS 60
            ||..:.:....|.|.:|        ::|:.:..:...||:.:|.|:....::.   :.:|:.|..
 Worm    17 TAQKLTEESDEKTLRKYFSTKVDDAQQKVADKSQNVRRLQAQRNELNTKVRML---KEELQQLHE 78

  Fly    61 VGQIVGEVLKQLTEDKFIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDP 125
            .|..||||.|.:.:.|.:||.....:|||...:.:|...|.:|.||||...:..:.:.||.:|||
 Worm    79 QGSYVGEVSKAMDKKKVLVKVHPEGKYVVDVDKSIDINSLNTGARVALRADSYALHKLLPNKVDP 143

  Fly   126 LVYNMSHEDPGDVTYSAIGGLTDQIRELREVIELPLLNPELFLRVGITPPKGCLLYGPPGTGKTL 190
            ||..|..|...|.||..:|||..||:|::||||||:.:||||..:||..|||.||:|||||||||
 Worm   144 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLFGPPGTGKTL 208

  Fly   191 LARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGT 255
            ||||||...:..|::|..|.:|.|:|||.||::||:|..||:|.|.||||||||:||..|....:
 Worm   209 LARAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGSS 273

  Fly   256 SADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEI 320
            ..|.|:|||::|||||:|||::...:|:||||||.|.||||||||||:|||||.|.|:|:||.:|
 Worm   274 GGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPAPDEKARADI 338

  Fly   321 LKIHALKIAKHGEIDYEAIVKLSDNFNGADLRNVCTEAGLFAIRAEREYVIQEDFMKAVRKV--S 383
            ||||:.|:.....|:...|.:.....:||::::||||||:||:|..|.:|.||||..||.||  .
 Worm   339 LKIHSRKMNLMRGINMAKIAEQIPGASGAEVKSVCTEAGMFALRERRIHVTQEDFEMAVGKVMQK 403

  Fly   384 DNKK 387
            |::|
 Worm   404 DSEK 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt4NP_572308.3 PRK03992 13..387 CDD:179699 178/383 (46%)
rpt-6NP_499609.1 PRK03992 52..410 CDD:179699 175/359 (49%)

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