DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Prosbeta2R1 and PBC2

DIOPT Version :10

Sequence 1:NP_572267.1 Gene:Prosbeta2R1 / 31511 FlyBaseID:FBgn0029812 Length:307 Species:Drosophila melanogaster
Sequence 2:NP_565156.1 Gene:PBC2 / 844080 AraportID:AT1G77440 Length:204 Species:Arabidopsis thaliana


Alignment Length:191 Identity:45/191 - (23%)
Similarity:88/191 - (46%) Gaps:15/191 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 GTSIVGIIYKDGVILGADTR--ATEGPIVSD-KNCSKIHHLQDHIYCCGAGTAADTEMITLTTSA 109
            |:::|.::.|:...:.:|.|  .....|.:| :..||||   ||::...:|.|.|.:.:......
plant     8 GSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIH---DHLFIGLSGLATDVQTLYQRLVF 69

  Fly   110 ELDLHRLNTERRV-PVVCASMMLRRTLFRYQGHIGAAL---VMGGV-DTTGPQLYCIYPCGSNDK 169
            ...|::|..||.: |...||::   :...|:...|..|   |:.|: |...|.:..:...|:.:.
plant    70 RHKLYQLREERDMKPETFASLV---SAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKEL 131

  Fly   170 I-PYAAMGSGTLAAMSVLEHGWKPDLDLEQGKQLVREAISAGVFNDLGSGSNIDLCVITAK 229
            . .:...|:.:.:.....|..:|||::.|:..:.:.:|:.:.|..|..||....:.|:|.|
plant   132 AKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTPK 192

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta2R1NP_572267.1 proteasome_beta_type_7 49..236 CDD:239732 44/190 (23%)
Pr_beta_C 240..274 CDD:463597
PBC2NP_565156.1 proteasome_beta_type_3 6..200 CDD:239728 45/191 (24%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.