DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Prosbeta2R1 and psma6b

DIOPT Version :10

Sequence 1:NP_572267.1 Gene:Prosbeta2R1 / 31511 FlyBaseID:FBgn0029812 Length:307 Species:Drosophila melanogaster
Sequence 2:NP_001002589.1 Gene:psma6b / 436862 ZFINID:ZDB-GENE-040718-329 Length:246 Species:Danio rerio


Alignment Length:235 Identity:56/235 - (23%)
Similarity:91/235 - (38%) Gaps:38/235 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 GLRSGFNFINCRRNAELLS---KGYEPPKAIKT----GTSIVGIIYKDGVILGADTRATEGPIVS 75
            |..:||:     |:..:.|   :.|:...|.|.    |.:.|.:..||..|:....:      |.
Zfish     4 GSSAGFD-----RHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAIVVTQKK------VP 57

  Fly    76 DK--NCSKIHHL---QDHIYCCGAGTAADTEMITLTTSAELDLHRLNTERRVPVVCASMMLRRTL 135
            ||  :.|.:.||   .::|.|..:|..||:.........|....:......:||   .|:.:|..
Zfish    58 DKLLDSSTVTHLFRITENIGCVMSGMTADSRSQVQRARYEAANWKYKYGYEIPV---DMLCKRIA 119

  Fly   136 FRYQGH--------IGAALVMGGVD-TTGPQLYCIYPCGSNDKIPYAAMGSGTLAAMSVLEHGWK 191
            ...|.:        :|..:::.|:| ..|||:|...|.|........|.|.....|.|.||...|
Zfish   120 DISQVYTQNAEMRPLGCCMIVIGLDEELGPQVYKCDPAGYYCGFKATAAGVKQTEATSFLEKKVK 184

  Fly   192 PDLD--LEQGKQLVREAISAGVFNDLGSGSNIDLCVITAK 229
            ..||  .||..:.....::..:..|. ..|.:::.||||:
Zfish   185 KKLDWTFEQAVETAITCLTTVLSIDF-KPSELEIGVITAE 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta2R1NP_572267.1 proteasome_beta_type_7 49..236 CDD:239732 47/197 (24%)
Pr_beta_C 240..274 CDD:463597
psma6bNP_001002589.1 proteasome_alpha_type_6 8..220 CDD:239723 51/226 (23%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.