DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lin-52 and lin52

DIOPT Version :8

Sequence 1:NP_001284908.1 Gene:lin-52 / 31499 FlyBaseID:FBgn0029800 Length:157 Species:Drosophila melanogaster
Sequence 2:NP_001071264.1 Gene:lin52 / 777755 ZFINID:ZDB-GENE-061110-82 Length:112 Species:Danio rerio

Alignment Length:105 Identity:42/105 - (40%)
Similarity:61/105 - (58%) Gaps:4/105 - (3%)


  Fly    52 EDELISMETL-RPSPVQWPERFPGMDEFLSMSDTPMYTRSTNYTSNLTDDDMVKINELAQLPPED 115
            |..|||:|.| |.||..|||:.||:.||.:....|:......:.:.|..:|:..:.||..|...:
Zfish    11 ESSLISLENLDRASPDLWPEQLPGVSEFAASFKNPITNSPPKWMAELESEDIEMLKELGSLTTAN 75

  Fly   116 LIDKIKSMHDEIYQLGLREAMEMTRGKLLGIFDRDRAPKR 155
            |::|:|.:.:..|||||.|:.||||||.|.|.:|   ||:
Zfish    76 LMEKVKGLQNLAYQLGLEESREMTRGKFLNILER---PKK 112

Known Domains:


GeneSequenceDomainRegion External IDIdentity
lin-52NP_001284908.1 LIN52 55..147 CDD:287062 37/92 (40%)
lin52NP_001071264.1 LIN52 14..107 CDD:287062 37/92 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 C166193766
eggNOG 1 0.900 E1_KOG4402
Hieranoid 1 1.000
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 80 1.000 Inparanoid score I5133
OMA 1 1.010
OrthoDB 1 1.010 D1513733at2759
OrthoFinder 1 1.000 FOG0005092
OrthoInspector 1 1.000 T1054740
orthoMCL 1 0.900 OOG5_136367
Panther 1 1.100 LDO PTHR31489
Phylome 1 0.910 0.667 Consistency score
RoundUp 1 1.030 avgDist Average_Evolutionary_Distance R5845
TreeFam 1 0.960
ZFIN 00.000 Not matched by this tool.
1312.800

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