DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SK and kcnn2

DIOPT Version :10

Sequence 1:NP_001284887.1 Gene:SK / 31456 FlyBaseID:FBgn0029761 Length:1174 Species:Drosophila melanogaster
Sequence 2:XP_073770716.1 Gene:kcnn2 / 564698 ZFINID:ZDB-GENE-091116-41 Length:674 Species:Danio rerio


Alignment Length:665 Identity:338/665 - (50%)
Similarity:445/665 - (66%) Gaps:74/665 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   275 QLQQQYHLQQQQQQHYQLQQHHLHQQQ--------------LQQSQQQVP----PV--LITSSPT 319
            |||..::.:||||||.: .||:..:::              .:.:::..|    |:  |.|.|.:
Zfish     6 QLQNNFYPEQQQQQHCK-YQHYCGREEERSIRHCTCNNSSTCEDARKSQPLHGTPLGTLRTPSVS 69

  Fly   320 NGSRIIRQSSQPESSSTAICCGPHSACVGHAHSHSHTVPNVSLKQLRES------SGDGIAGIAA 378
            :.:|...|.|:...||..      |:...|.|.|.|...:.:.:|:|.|      ..:....||.
Zfish    70 SSTRQGAQYSEFTPSSHG------SSSRHHHHHHHHPHRDHNRQQIRGSPASSHRESNSYTQIAM 128

  Fly   379 DSLRINGG-MRPFKQLRKPASTLSIPGSMKTPSIANREQISSGCNEEAAEALVGIHSDYPRYMEE 442
            .|.|.||| |||...|......|....|...|    .:.:|:.   :|::.|    :..|   |.
Zfish   129 SSCRYNGGVMRPLSNLSSSRRNLHEFDSESQP----LQPVSAA---DASDTL----ASKP---EN 179

  Fly   443 RALT--------------GGNTSRKPSTNSAKHKPNVGYRLGKRKALFEKRKRISDYALVMGMFG 493
            .:.|              ||..|...|.:..|...|:|.:||.|:||||||||:|||||:.||||
Zfish   180 NSSTLMPYATGDGGGGGGGGGCSHSGSKSGKKKNQNIGQKLGHRRALFEKRKRLSDYALIFGMFG 244

  Fly   494 IIVMVIENELSSAGVYTKASFYSTALKTLISVSTVILLGLIVAYHALEVQVRLFMIDNCADDWRI 558
            |:|||||.|| |.|.|.|.|.||.|||.|||:||:||||||:.|||.|:|  |||:||.||||||
Zfish   245 IVVMVIETEL-SWGAYGKESLYSLALKCLISLSTIILLGLIIIYHAREIQ--LFMVDNAADDWRI 306

  Fly   559 AMTWQRISQIGLELFICAIHPIPGEYYFQWTTKLANKNKTIGTEMVPYDVALSLPMFLRLYLICR 623
            |||::||..|.||:.:||||||||.|.|.||.:||.......|: ...|:.||:|||||||||.|
Zfish   307 AMTYERIFFICLEILVCAIHPIPGNYTFTWTARLAFSYAPSKTD-ADVDIILSIPMFLRLYLIAR 370

  Fly   624 VMLLHSKLFTDASSRSIGALNRINFNTRFVLKTLMTICPGTVLLVFMVSLWIIASWTLRQCERFH 688
            |||||||||||||||||||||:||||||||:|||||||||||||||.:||||||:||:|.|||:|
Zfish   371 VMLLHSKLFTDASSRSIGALNKINFNTRFVMKTLMTICPGTVLLVFTISLWIIAAWTVRACERYH 435

  Fly   689 D--EEHANLLNAMWLIAITFLSVGFGDIVPNTYCGRGIAVSTGIMGAGCTALLVAVVSRKLELTR 751
            |  :..:|.|.|||||:||||::|:||:|||||||:|:.:.|||||||||||:||||::|||||:
Zfish   436 DNMDVTSNFLGAMWLISITFLTIGYGDMVPNTYCGKGVCLLTGIMGAGCTALVVAVVAKKLELTK 500

  Fly   752 AEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNPGRVRTHQRKFLLAIYALRKVK 816
            |||||||||||||||||:||.|||||||||||||:|:||::::..:||.||||||.||:.||.||
Zfish   501 AEKHVHNFMMDTQLTKRVKNTAANVLRETWLIYKNTKLVRKMDHAKVRKHQRKFLQAIHQLRSVK 565

  Fly   817 MDQRKLMDNANTITDMAKTQNTVYEIISDMSSRQDAIEERLTNLEDKMQSIQEHMESLPDLLSRC 881
            |:||||.|.||::.|:|||||.:|:::||::.|.:.:|:|:..||.|::::..::::||.|:|:.
Zfish   566 MEQRKLNDQANSLVDLAKTQNVMYDLVSDLNERGEDMEKRIALLETKLETLLSNLQALPGLISQV 630

  Fly   882 LTQHQERIEQRRNFL 896
            ::|      |.|:||
Zfish   631 ISQ------QHRDFL 639

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SKNP_001284887.1 SK_channel 469..581 CDD:460958 78/111 (70%)
Ion_trans_2 669..748 CDD:462301 53/80 (66%)
CaMBD 762..836 CDD:460739 50/73 (68%)
kcnn2XP_073770716.1 None

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