DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rnp4F and rnps1

DIOPT Version :10

Sequence 1:NP_511047.2 Gene:Rnp4F / 31448 FlyBaseID:FBgn0014024 Length:941 Species:Drosophila melanogaster
Sequence 2:NP_001015956.1 Gene:rnps1 / 548710 XenbaseID:XB-GENE-941526 Length:284 Species:Xenopus tropicalis


Alignment Length:173 Identity:49/173 - (28%)
Similarity:73/173 - (42%) Gaps:39/173 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   685 KKSRTEPSGGATSPP-----------SKVKGPANAEAKESNFKYSPNMEINKIFVRNLHPACSKE 738
            :.|.:..|.|:.||.           ||.|.|...|.:..  :.||:....|:.:..|....:|:
 Frog    91 RSSSSSSSSGSPSPSRRRHDNRRRSRSKSKQPKRDEKERK--RRSPSPRPTKVHIGRLTRNVTKD 153

  Fly   739 ELHELFSPFGTIKDVRL-VHKLNKQF-KGIAYVEFEKPGEAQRAVAGRDGCLFKGMNISV-AISN 800
            .:.|:||.:|.||.:.: |.:.:... ||.||||||.|.||::|:...||....|..|:. |:..
 Frog   154 HILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKHMDGGQIDGQEITASAVLT 218

  Fly   801 P-----------PPRGTSAVKP------------SVAPKRRVP 820
            |           |||......|            |.:|:||.|
 Frog   219 PWPMRAMPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSP 261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rnp4FNP_511047.2 RRM_SF 722..802 CDD:473069 28/93 (30%)
2A1904 <860..>925 CDD:273344
Lsm_interact 922..940 CDD:398843
rnps1NP_001015956.1 RRM_RNPS1 141..214 CDD:409800 25/72 (35%)
Blue background indicates that the domain is not in the aligned region.

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