DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rnp4F and RnpS1

DIOPT Version :10

Sequence 1:NP_511047.2 Gene:Rnp4F / 31448 FlyBaseID:FBgn0014024 Length:941 Species:Drosophila melanogaster
Sequence 2:XP_318582.4 Gene:RnpS1 / 1278931 VectorBaseID:AGAMI1_009907 Length:323 Species:Anopheles gambiae


Alignment Length:211 Identity:49/211 - (23%)
Similarity:87/211 - (41%) Gaps:21/211 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   627 KPRSRIKPNSQSAYPRQQKLKPRQQQQQTNREP---------LNREQRRRQAHEQQQQQQQQQKH 682
            |..:|.:..|:|..|.|......:|...|.:||         .::|:..|::.|.:...::.   
Mosquito    83 KTNTRSRSRSRSKSPAQPAQSWDKQSAATAKEPPVKGTSVRSKSKEKTERRSSEPRDNDKEN--- 144

  Fly   683 GIKKSRTEPSGGATSPPSKVKGPANAEAKESNFKYSPNMEINKIFVRNLHPACSKEELHELFSPF 747
              |::|. ||...:...|:.:...:..:|....:.|......:|.:..|....:::.:.|:||.:
Mosquito   145 --KQARA-PSVDKSIKDSRSRRSRSGSSKRKRRERSVTPRPVRIHIGRLTRNVNRDHIVEIFSSY 206

  Fly   748 GTIKDVRLVHKLNKQF-KGIAYVEFEKPGEAQRAVAGRDGCLFKGMNIS-----VAISNPPPRGT 806
            |.|..|....:..:.| :|..|||:..|..|:.|:...||....|..|:     |....||.|..
Mosquito   207 GEISKVDFPMERFQPFGRGFCYVEYVDPNGAENAMKHMDGGQIDGQEITASPVLVQKQRPPMRRP 271

  Fly   807 SAVKPSVAPKRRVPTS 822
            |.:..:..|..|..||
Mosquito   272 SPIMRNNRPMPRWRTS 287

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rnp4FNP_511047.2 RRM_SF 722..802 CDD:473069 21/85 (25%)
2A1904 <860..>925 CDD:273344
Lsm_interact 922..940 CDD:398843
RnpS1XP_318582.4 None
Blue background indicates that the domain is not in the aligned region.

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