DRSC/TRiP Functional Genomics Resources

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Protein Alignment snf and msl1

DIOPT Version :10

Sequence 1:NP_511045.1 Gene:snf / 31442 FlyBaseID:FBgn0003449 Length:216 Species:Drosophila melanogaster
Sequence 2:NP_595571.1 Gene:msl1 / 2541219 PomBaseID:SPBC8D2.09C Length:111 Species:Schizosaccharomyces pombe


Alignment Length:90 Identity:44/90 - (48%)
Similarity:67/90 - (74%) Gaps:1/90 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 NQ-TIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTM 69
            || |:|:||||:||.|.:|:.:||.:||.:|.::|||||||.||||||.|:|.:..:|:.|::.:
pombe     2 NQNTLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMKAL 66

  Fly    70 QGFPFYDKPMQIAYSKSDSDIVAKI 94
            :.|.|:.|.|:|.|:.|.|.|:.:|
pombe    67 KNFIFFGKEMKIQYAHSKSKIIERI 91

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snfNP_511045.1 RRM1_SNF 1..85 CDD:409905 40/79 (51%)
RRM2_SNF 137..216 CDD:240923
msl1NP_595571.1 RRM1_U1A_like 5..82 CDD:409692 38/76 (50%)
Blue background indicates that the domain is not in the aligned region.

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