Protein Alignment snf and rnp-2

DIOPT Version :10

• Sequence 1: NP_511045.1
• Gene: snf / 31442
• FlyBaseID: FBgn0003449
• Length: 216
• Species: Drosophila melanogaster
• Sequence 2: NP_500504.1
• Gene: rnp-2 / 177181
• WormBaseID: WBGene00004385
• Length: 206
• Species: Caenorhabditis elegans
• Alignment Length: 216
• Identity: 108/216 - (50%)
• Similarity: 144/216 - (66%)
• Gaps: 13/216 - (6%)

  Fly     2 EMLPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNAL 66
            |:.||.|:||||||||||.:||:|||.|:|.|||:|:.::..:||||||||.|||||:.:||.|.
 Worm     3 EVAPNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFKELPAASAAR 67

  Fly    67 RTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTF-KERPKKVKPPKPAPGTDEKKDKKKKPSSAENS 130
            ..:.|||||:|||:|.:::.|||:||:.|||: |..||.:         .||..||.|....||.
 Worm    68 EALNGFPFYEKPMRIQFAREDSDVVAQEKGTYIKREPKYL---------SEKILKKPKSRKKENG 123

  Fly   131 NPNAQTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAK 195
            ...   ..|||:|||.||||:.....||.::||||.|.|::|:||||..||||||.|:..:..|:
 Worm   124 GDG---PAPPNKILFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFDTDSLAIPAR 185

  Fly   196 EALQGFKITPTHAMKITFAKK 216
            ..|..|||:..|.|::.:|||
 Worm   186 TTLNNFKISAEHTMRVDYAKK 206

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snf	NP_511045.1	RRM1_SNF	1..85	CDD:409905	50/82 (61%)
		RRM2_SNF	137..216	CDD:240923	38/78 (49%)
rnp-2	NP_500504.1	RRM1_U1A_like	9..86	CDD:409692	47/76 (62%)
		RRM2_U1A_like	130..201	CDD:409693	36/70 (51%)