DRSC/TRiP Functional Genomics Resources

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Protein Alignment ovo and ham

DIOPT Version :9

Sequence 1:NP_001162673.1 Gene:ovo / 31429 FlyBaseID:FBgn0003028 Length:1351 Species:Drosophila melanogaster
Sequence 2:NP_724130.4 Gene:ham / 35135 FlyBaseID:FBgn0045852 Length:1108 Species:Drosophila melanogaster


Alignment Length:614 Identity:117/614 - (19%)
Similarity:196/614 - (31%) Gaps:246/614 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   839 QQHHQQHGVQQQQQQQ--HSVQQQQQHNVQQQHGVQQQHVQQQPPPSYQHATRGLMMQQQPQHGG 901
            :.||..|.:....:.|  :.:.:|.:.:...:|.:.||...:..||...|               
  Fly    24 RHHHHLHHLDLSARSQGFNPLSEQIEDSFAARHHLPQQEPVEGSPPRRDH--------------- 73

  Fly   902 YQQQAAIMSQQQQQLLSQQQQQSH-HQQQQQQQ-------------HAAAYQQHNIYAQQQQQQQ 952
                   :..|.|:||   ...:| |||.|:||             .|||.....:.|..:.:.|
  Fly    74 -------LDIQDQELL---HHPNHFHQQNQRQQPPPPTLPLSVESSSAAAASVDGMDAFFKDRAQ 128

  Fly   953 QQHHQQ--------------------------QQQQQHHHFHHQQQQQP-QPQ----SHHSHHHG 986
            .:|..|                          |:..::..|..:...|| .||    :|..|::|
  Fly   129 AEHILQEWVRRREPVCELDIRDSGGVYAKTPLQRGTRYGPFPMKLSHQPNDPQLAWKAHSRHYNG 193

  Fly   987 -----------------------------------------------------HGHDNSNMSLPS 998
                                                                 .|...|.:.|..
  Fly   194 WLEPTEDVSTWLKKIRSVQDDCIGEANLQSYINAGYLWYETNRYVNAGSEMVVDGRPKSPVQLNE 258

  Fly   999 PTAAAAAAAAAAAAAAAAAAHLQRPMSSSSSSGGTNSSNSSGGSSNSPLLDA----NAAAAAAAA 1059
            .........|||||||||..       ::||||    :.|.||.|::|..|.    |.:..:...
  Fly   259 DFMNGGKVLAAAAAAAAAVV-------AASSSG----AKSGGGGSSAPSDDRSDRDNGSLYSGDE 312

  Fly  1060 LLDTKPLIQSLGLPPDLQLEFVNGGHGIKNPLAVENAHGGHHRIR---------NIDCIDDLSKH 1115
            ....|   ::..|..:..::|.:..:|..              ||         ::|.:||   |
  Fly   313 FSKDK---KNSSLIREGDIDFTDDENGFD--------------IRCEVCDKVYPDLDLLDD---H 357

  Fly  1116 GHHSQHQQQQGSPQQQNMQQSVQQQSVQQQQSLQQQQQQQHHQHHSNSSASSNASSHGSAEALCM 1180
            ...:.|.:|...|.:|...:...:..:.:.:::.          |:|.                 
  Fly   358 LIGAHHFKQDEFPCKQCALRFCHRPLLIKHEAIS----------HNNI----------------- 395

  Fly  1181 GSSGGANEDSSSGNNKFVCRVCMKTFSLQRLLNRHMKC-HSDIKRYLCTFCGKGFNDTFDLKRHT 1244
                          .|:.|..|.|.|.....|.||::. |...:.:.|..|||.|..:..||:|.
  Fly   396 --------------RKYSCENCSKVFCDPSNLQRHIRAYHVGARCHPCPECGKTFGTSSGLKQHQ 446

  Fly  1245 RTHTGVRPYKCNLCEKSFTQRCSLESHCQKVHSVQHQYAYKERRAKMYV-CEECGHTTCEPEVHY 1308
            ..|:.|:|:.|.:|.|::||..:|..| :::|:.          .:|.: |::|           
  Fly   447 HIHSSVKPFACEVCSKAYTQFSNLCRH-KRMHAT----------CRMQIKCDKC----------- 489

  Fly  1309 LHLKNNHPFS--PALLKFYDKRHFKFTNS 1335
                 |..||  .:|.|     |.||.:|
  Fly   490 -----NQSFSTLTSLTK-----HKKFCDS 508

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ovoNP_001162673.1 C2H2 Zn finger 1199..1219 CDD:275368 7/20 (35%)
zf-H2C2_2 1212..1235 CDD:290200 8/23 (35%)
C2H2 Zn finger 1227..1247 CDD:275368 8/19 (42%)
zf-H2C2_2 1239..1264 CDD:290200 9/24 (38%)
C2H2 Zn finger 1255..1276 CDD:275368 7/20 (35%)
hamNP_724130.4 PR-SET_ZFPM 131..253 CDD:380978 12/121 (10%)
C2H2 Zn finger 341..363 CDD:275368 4/24 (17%)
C2H2 Zn finger 371..392 CDD:275368 1/30 (3%)
SFP1 <391..479 CDD:227516 30/129 (23%)
C2H2 Zn finger 400..421 CDD:275368 7/20 (35%)
SUF4-like 403..>445 CDD:411020 14/41 (34%)
C2H2 Zn finger 403..421 CDD:411020 6/17 (35%)
C2H2 Zn finger 429..449 CDD:275368 8/19 (42%)
C2H2 Zn finger 457..477 CDD:275368 7/20 (35%)
C2H2 Zn finger 486..504 CDD:275368 8/38 (21%)
PTZ00121 <641..>728 CDD:173412
COG5048 935..>1028 CDD:227381
zf-C2H2 935..957 CDD:395048
C2H2 Zn finger 937..957 CDD:275368
zf-H2C2_2 949..973 CDD:404364
C2H2 Zn finger 965..986 CDD:275368
C2H2 Zn finger 994..1014 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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