DRSC/TRiP Functional Genomics Resources

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Protein Alignment Torsin and Tor1a

DIOPT Version :10

Sequence 1:NP_572178.1 Gene:Torsin / 31399 FlyBaseID:FBgn0025615 Length:340 Species:Drosophila melanogaster
Sequence 2:NP_695215.2 Gene:Tor1a / 266606 RGDID:628863 Length:333 Species:Rattus norvegicus


Alignment Length:330 Identity:111/330 - (33%)
Similarity:187/330 - (56%) Gaps:16/330 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LSVLVILPLPLQSVDPLTIG-AVGAVALGAYFKEHTYCRFAECCDDRNIPARIDELERSLERTLI 75
            |::|:::|..:::|:|:::| |:..|..|.......||.|||||..:...:| :.|::.|:..|.
  Rat     8 LALLLLVPCVVRAVEPISLGLALAGVLTGYISYPRLYCLFAECCGQKRSLSR-EALQKDLDNKLF 71

  Fly    76 GQHIVRQHIVPALKAHIASGNKSRKPLVISFHGQPGTGKNFVAEQIADAMYLKGSRSNYVTKYLG 140
            |||:.::.|:.|:...: |..|.:|||.:|.||..||||||.::.||:.:|..|..|:||..::.
  Rat    72 GQHLAKRVILNAVSGFL-SNPKPKKPLTLSLHGWTGTGKNFASKIIAENIYEGGLNSDYVHLFVA 135

  Fly   141 QADFPKESEVSNYRVKINNAVRDTLRSCPRSLFIFDEVDKMPSGVFDQLTSLVDYNAFVDGTDNT 205
            ...||..|.::.|:.::...:|..:.:|.||:|||||:|||.:|:.|.:...:||...||.....
  Rat   136 TLHFPHASNITLYKDQLQMWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPFLDYYDVVDEVSYQ 200

  Fly   206 KAIFIFLSNTAGSHIASHLGSVMKNGRLREDTRLSDFEPLLRKAAY-NMDGGMKKTTMIESHVID 269
            |||||||||.....|........::|:.||:.:|.|.|..|..:.: |.:.|...:::|:.::||
  Rat   201 KAIFIFLSNAGAERITDVALDFWRSGKQREEIKLRDMEHALAVSVFNNKNSGFWHSSLIDRNLID 265

  Fly   270 HFIPFLPMEKAHVIKCLEAELLRWRRDPKQANNQKIIEDIINSSIS----YDRTHSLFAISGCKT 330
            :|:||||:|..|:..|:..|:        |:...:..|||||....    :.:...:|:..||||
  Rat   266 YFVPFLPLEYKHLKMCIRVEM--------QSRGYEEDEDIINKVAEEMTFFPKEEKVFSDKGCKT 322

  Fly   331 LEKKV 335
            :..|:
  Rat   323 VFTKL 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TorsinNP_572178.1 P-loop containing Nucleoside Triphosphate Hydrolases 55..175 CDD:476819 39/119 (33%)
Tor1aNP_695215.2 Torsin 56..170 CDD:399367 39/115 (34%)
Interaction with SNAPIN. /evidence=ECO:0000250 92..252 60/159 (38%)
Interaction with KLC1. /evidence=ECO:0000250 252..333 25/84 (30%)
Interaction with SYNE3. /evidence=ECO:0000250 313..333 6/15 (40%)

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