DRSC/TRiP Functional Genomics Resources

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Protein Alignment CHOp24 and AT1G69460

DIOPT Version :10

Sequence 1:NP_572165.1 Gene:CHOp24 / 31382 FlyBaseID:FBgn0029709 Length:208 Species:Drosophila melanogaster
Sequence 2:NP_177105.2 Gene:AT1G69460 / 843278 AraportID:AT1G69460 Length:214 Species:Arabidopsis thaliana


Alignment Length:222 Identity:50/222 - (22%)
Similarity:96/222 - (43%) Gaps:24/222 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MESTLAKVLLLVGSLLILCRTSHAFIVSVDAHNEECFFENVEGGT----KFGVTFEVIDGGFL-- 59
            ::|.....:||:  |.|....||:....:.:...:|..|:::..:    |:.:. ...:|..|  
plant     3 LQSQKLWTMLLI--LAIWSPISHSLHFDLHSGRTKCIAEDIKSNSMTVGKYNID-NPHEGQALPQ 64

  Fly    60 --DVDIKISGPDNHVMHESEKESSGKYTFVAPAKGTYTVCFNNERSSMTPKLVMFSIDVGDAPQR 122
              .:.:|::....:..|.:|:..||::.|.|...|.|..||.  .....|: |..|||.    :.
plant    65 THKISVKVTSNSGNNYHHAEQVDSGQFAFSAVEAGDYMACFT--AVDHKPE-VSLSIDF----EW 122

  Fly   123 APGAPGEEEVGHTK------LEDMIRELSGTLTSVKHEQEYMHVRDKIHRSVNENTNSRVVLWST 181
            ..|...:......|      :|..::.|..|:.|:..|..|:..|::..:.:|.:||:::...|.
plant   123 KTGVQSKSWANVAKKSQVEVMEFEVKSLLDTVNSIHEEMYYLRDREEEMQDLNRSTNTKMAWLSV 187

  Fly   182 FEALVLVLMTVGQVYYLKRFFEVKRVV 208
            ....|.:.:...|..:||.|||.|:|:
plant   188 LSFFVCIGVAGMQFLHLKTFFEKKKVI 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHOp24NP_572165.1 EMP24_GP25L 24..203 CDD:426051 39/192 (20%)
AT1G69460NP_177105.2 EMP24_GP25L 24..209 CDD:426051 39/192 (20%)

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