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Protein Alignment CHOp24 and Tmed9

DIOPT Version :10

Sequence 1:	NP_572165.1	Gene:	CHOp24 / 31382	FlyBaseID:	FBgn0029709	Length:	208	Species:	Drosophila melanogaster
Sequence 2:	NP_080487.2	Gene:	Tmed9 / 67511	MGIID:	1914761	Length:	235	Species:	Mus musculus

Alignment Length:	233	Identity:	54/233 - (23%)
Similarity:	102/233 - (43%)	Gaps:	47/233 - (20%)

- Green bases have known domain annotations that are detailed below.

  Fly    10 LLVGS-------LLILCRTSHAFIVSVDAHNEECFFENVEGGTKFGVTFEVIDGGF--------- 58
            ||:|.       ||.|.....|....:....::||.|.:...|       ::.|.:
Mouse    16 LLLGRGMRAFLLLLWLAARGSALYFHIGETEKKCFIEEIPDET-------MVIGNYRTQLYDKQR 73

  Fly    59 ---------LDVDIKISGPDNHVMHESEKESSGKYTFVAPAKGTYTVCFNNERSSMTPKLVMFS- 113
                     |.:.:::..|::.|:...:..|.|::||.:...|.:.:|.:    |.:.|..:|:
Mouse    74 EEYQPATPGLGMFVEVKDPEDKVILARQYGSEGRFTFTSHTPGEHQICLH----SNSTKFSLFAG 134

  Fly   114 --------IDVGDAPQRAPGAPGEEEVGHTKLEDMIRELSGTLTSVKHEQEYMHVRDKIHRSVNE 170
                    |.||:..........::::...:|.  :|:|...:..::.||.|...|::..|..:|
Mouse   135 GMLRVHLDIQVGEHANDYAEIAAKDKLSELQLR--VRQLVEQVEQIQKEQNYQRWREERFRQTSE 197

  Fly   171 NTNSRVVLWSTFEALVLVLMTVGQVYYLKRFFEVKRVV 208
            :||.||:.||..:.|:||.:.|.|:.:||.|||.|::|
Mouse   198 STNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKKLV 235

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.