DRSC/TRiP Functional Genomics Resources

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Protein Alignment: CG42541 and rem1

Sequence 1:NP_996345.3 Gene:CG42541 FlyBaseID:FBgn0260658 Length:1418 Species:Drosophila melanogaster
Sequence 2:XP_012810748.1 Gene:rem1 XenbaseID:XB-GENE-493530 Length:280 Species:Xenopus tropicalis

Alignment Length:257 Identity:79/258 (31%)
Similarity:121/258 (47%) Gaps:41/258 (16%)


  Fly   968 SRSINSVTSTGTSNSGVDRHNSNASGASGEVIDGDPNVPAYKIAMLGASGVGKTTLTYQFTTSDY 1032
            |::..|...:|:.:|||.              || .|....::.:||..||||::|...|.....
 Frog    37 SKAAGSAHCSGSLDSGVS--------------DG-RNEAHLRVVLLGDPGVGKSSLVAIFRREQD 86

  Fly  1033 ICAYDLSLDDDYGQKTVSVLVDNIETDLEIIDHPACEM--STEAFCATYNI-DLFVVVYSVIDRN 1094
            ..|.:..|.:.:   ..:::||..||.|.::|.....|  :.|:..:...: :.:::||||.||.
 Frog    87 REAAEQQLAEVF---DCTLMVDGKETTLLVMDTDERNMKKAIESSDSPMRLGNAYIIVYSVTDRA 148

  Fly  1095 TFAAAERVLQYLKENEMLLSRGAILVANKTDLQRHRVVTRQMGRKVAKEIACKFIETSSGLDHNV 1159
            :|.:|..:...|:......:...|||.|||||.|.|.|:.:.||..|....|||||||:.|.|||
 Frog   149 SFESASELRIQLRRTRQAENIPIILVGNKTDLVRSREVSVEEGRACAVVFDCKFIETSAVLQHNV 213

  Fly  1160 DELLVGIVAQVKL-------------NPQRLRLLTELE---LQRL---NLQSTIQKH-RGMH 1201
            .||..|:|.|::|             ..||...||:..   |.||   |.:|:::.| |..|
 Frog   214 QELFEGMVRQIRLRREGADTAEGFRMQSQRKESLTKRARRFLDRLVTRNSRSSLKVHSRSCH 275

Known Domains:


GeneSequenceDomainRegion External IDIdentity
CG42541NP_996345.3 RGK 1008..>1175 CDD:206715 58/183 (32%)
small_GTPase 1008..1171 CDD:197466 57/166 (34%)
rem1XP_012810748.1 RGK 62..280 CDD:206715 70/218 (32%)
small_GTPase 63..227 CDD:197466 58/167 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 D301527at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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