DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42541 and rem1

DIOPT Version :10

Sequence 1:NP_996345.3 Gene:CG42541 / 31344 FlyBaseID:FBgn0260658 Length:1418 Species:Drosophila melanogaster
Sequence 2:XP_012810748.1 Gene:rem1 / 100124825 XenbaseID:XB-GENE-493530 Length:280 Species:Xenopus tropicalis


Alignment Length:257 Identity:79/257 - (30%)
Similarity:121/257 - (47%) Gaps:41/257 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   968 SRSINSVTSTGTSNSGVDRHNSNASGASGEVIDGDPNVPAYKIAMLGASGVGKTTLTYQFTTSDY 1032
            |::..|...:|:.:|||.              || .|....::.:||..||||::|...|.....
 Frog    37 SKAAGSAHCSGSLDSGVS--------------DG-RNEAHLRVVLLGDPGVGKSSLVAIFRREQD 86

  Fly  1033 ICAYDLSLDDDYGQKTVSVLVDNIETDLEIIDHPACEM--STEAFCATYNI-DLFVVVYSVIDRN 1094
            ..|.:..|.:.:   ..:::||..||.|.::|.....|  :.|:..:...: :.:::||||.||.
 Frog    87 REAAEQQLAEVF---DCTLMVDGKETTLLVMDTDERNMKKAIESSDSPMRLGNAYIIVYSVTDRA 148

  Fly  1095 TFAAAERVLQYLKENEMLLSRGAILVANKTDLQRHRVVTRQMGRKVAKEIACKFIETSSGLDHNV 1159
            :|.:|..:...|:......:...|||.|||||.|.|.|:.:.||..|....|||||||:.|.|||
 Frog   149 SFESASELRIQLRRTRQAENIPIILVGNKTDLVRSREVSVEEGRACAVVFDCKFIETSAVLQHNV 213

  Fly  1160 DELLVGIVAQVKL-------------NPQRLRLLTELE---LQRL---NLQSTIQKH-RGMH 1201
            .||..|:|.|::|             ..||...||:..   |.||   |.:|:::.| |..|
 Frog   214 QELFEGMVRQIRLRREGADTAEGFRMQSQRKESLTKRARRFLDRLVTRNSRSSLKVHSRSCH 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42541NP_996345.3 Amelogenin <477..>550 CDD:197891
RGK 1008..>1175 CDD:206715 58/182 (32%)
rem1XP_012810748.1 RGK 62..280 CDD:206715 70/217 (32%)
Blue background indicates that the domain is not in the aligned region.

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