DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syx4 and stx19

DIOPT Version :10

Sequence 1:NP_525057.2 Gene:Syx4 / 31269 FlyBaseID:FBgn0024980 Length:333 Species:Drosophila melanogaster
Sequence 2:XP_009302853.3 Gene:stx19 / 570366 ZFINID:ZDB-GENE-150909-2 Length:296 Species:Danio rerio


Alignment Length:225 Identity:47/225 - (20%)
Similarity:103/225 - (45%) Gaps:9/225 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 NVDDILNPYTEIRQQLAQIAANLETMNRMAQTVNLRTFNENEMDELHNKNLRLGNQLMTRFNDFK 147
            :::::.:..::..:|.....|.:..::.|.:..|:....:...:.||.:...|..|.    ...:
Zfish    64 SIEELNSEVSKFNEQQKNFVATMRRLSIMKKESNMTRDIKLLAESLHKRLDALSKQA----KQTE 124

  Fly   148 ANL-PAENDYSLEARMKRTLFYGLHQTFINLWHKNELFLQNYETKVKKNLRLHTKIINSEASEQE 211
            |.| |......::......||...||.   :...|:..|...| |.|:.:....::...|.||:|
Zfish   125 AELGPNATTSRIQKIQHAALFLQFHQV---MRQHNDAILSKQE-KCKQFIIRQLEVSGREVSEEE 185

  Fly   212 IELLIENKTTKLFVDNFLQETEKERQTLREMMDRFNELRRLEKSIEEVHALFMRIQTLVMEQSEV 276
            ::.:||....::|.:|.:.:.:..|..|.|:..|..||..||.:::::..||:.:..||.||...
Zfish   186 VDNMIEQGKWEIFNENIIVDAKITRTQLSEIEQRHKELLNLESNMKDLRDLFLDVFMLVEEQGHQ 250

  Fly   277 IQRVEFHAQQATLHVDKGADELDQAEQHQK 306
            ||.::.:.::...:|....::..:|.:::|
Zfish   251 IQNIQANVEKTQDYVSVTKEKFKRAARYKK 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syx4NP_525057.2 COG5074 <187..313 CDD:227406 30/120 (25%)
SNARE_syntaxin1-like 238..298 CDD:277201 16/59 (27%)
stx19XP_009302853.3 None

Return to query results.
Submit another query.