DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syx4 and stx11b.1

DIOPT Version :10

Sequence 1:NP_525057.2 Gene:Syx4 / 31269 FlyBaseID:FBgn0024980 Length:333 Species:Drosophila melanogaster
Sequence 2:NP_957156.1 Gene:stx11b.1 / 393836 ZFINID:ZDB-GENE-040426-1893 Length:295 Species:Danio rerio


Alignment Length:284 Identity:60/284 - (21%)
Similarity:122/284 - (42%) Gaps:21/284 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 NNSYSVVSQNSH-----SCSNNNSSTEPKDRSSSKMTQYGSNVDDILNPYTEIRQQLAQIAANLE 106
            |:..::...:||     |.|.:|...|......:.:...|.:::.:|:...:.|:::..|...::
Zfish     6 NHLLTISETDSHLEEVESDSFSNVDLEENFSQQAVIFDNGEDMESVLDEAQDTRREIQLIRLEVK 70

  Fly   107 TMNRMAQTVNLRTFNENEMDELHNKNLR-LGNQLMTRFNDFKANLPAENDYSLE----------- 159
            .:    :..|.|..||........::.. :...:.||..|..|.|...:.::.|           
Zfish    71 RL----RDQNTRILNEPTRTSYVKRDANAIAGDIKTRGVDVLARLQKMDAHAKELQEEHGINSAV 131

  Fly   160 ARMKRTLFYGLHQTFINLWHKNELFLQNYETKVKKNLRLHTKIINSEASEQEIELLIENKTTKLF 224
            ||:.||.:..|...|.:...:......|::...|::::...:|:..|.|..:||.::||....:|
Zfish   132 ARIARTQYATLSNNFQDAMTEYNDAEMNHKESCKRHIQRQMEIVGREVSGDQIEEMLENGEWNVF 196

  Fly   225 VDNFLQETEKERQTLREMMDRFNELRRLEKSIEEVHALFMRIQTLVMEQSEVIQRVEFHAQQATL 289
            .||.:.|.:..|..|.::..|..||..||..:..:|.:|:.:..||.||..:...:..:.|:...
Zfish   197 NDNIMSEGKTARSALNQIEHRHRELLELENRLNSLHEVFLDVAMLVEEQGPMTDYILNNVQKTDA 261

  Fly   290 HVDKGADELDQAEQHQKKARKKKI 313
            .:.:...:|.||::|......||:
Zfish   262 VLGEVLIKLAQAKRHDNNNPFKKM 285

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syx4NP_525057.2 COG5074 <187..313 CDD:227406 32/125 (26%)
SNARE_syntaxin1-like 238..298 CDD:277201 13/59 (22%)
stx11b.1NP_957156.1 Syntaxin 50..246 CDD:459942 44/199 (22%)

Return to query results.
Submit another query.