DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG16903 and koko

DIOPT Version :10

Sequence 1:NP_569980.1 Gene:CG16903 / 31178 FlyBaseID:FBgn0040394 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_732338.1 Gene:koko / 14462485 FlyBaseID:FBgn0264816 Length:259 Species:Drosophila melanogaster


Alignment Length:253 Identity:57/253 - (22%)
Similarity:107/253 - (42%) Gaps:52/253 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 LRLPQVAMATGQVLFQRFFYSKSFVRHNMETVAMSCVCLASKI-EEAPRRIRDVINVFHHIKQVR 192
            |::..:..|...::|.|||.......::...:|...:.||.|| |:...:|||||||.:    ..
  Fly    47 LKMKPLTAACAAIVFHRFFREVKASDYDEFLIAAGSLYLAGKIKEDESVKIRDVINVAY----CT 107

  Fly   193 AQKEISPMVLDPYYTNLKMQVIKAERRVLKELGFCVHVKHPHKLIVMYLQVLQYEKHEKLMQLSW 257
            ..:...|:.|:..|.:::..:::||..:.:.|.|.:::...||.::.|::.||    :.:....|
  Fly   108 LNRGNDPVDLNDEYWSMRDAIVQAELLITRTLCFDLNIDLAHKYLLHYMKTLQ----DWVGTEVW 168

  Fly   258 N----------FMNDSLRTDVFMRYTPEAIACACIYLSARKLNIPLPNSPPWFGIFRVPMADITD 312
            |          ::.|...:...::|.|..:|..|:.|:.:.           :|| :||:.|.:|
  Fly   169 NSVPIAKAAASYLQDFHHSANILKYKPTHVAIGCLSLALQT-----------YGI-QVPLTDESD 221

  Fly   313 ICYRVMELYMRSKPVVEKLEAAVDELKKRYIDARNKTKEANTPPAVITVDRNNGSHNA 370
                  |..|..||:|:..               .:..:......||.|.:|.|..||
  Fly   222 ------ESAMWYKPLVKDF---------------TRENQWEIIENVIEVYKNEGFLNA 258

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG16903NP_569980.1 CYCLIN_CCNL1_rpt1 104..227 CDD:410292 25/98 (26%)
CYCLIN_CCNL_rpt2 232..323 CDD:410236 20/100 (20%)
SDP_N <440..>482 CDD:463517
kokoNP_732338.1 CYCLIN_CCNM_CCNQ_rpt1 32..142 CDD:410237 25/98 (26%)
CYCLIN_CCNM_CCNQ_rpt2 147..252 CDD:410238 27/141 (19%)
Blue background indicates that the domain is not in the aligned region.

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