Protein Alignment Rtca and RCL1

DIOPT Version :10

• Sequence 1: NP_569977.1
• Gene: Rtca / 31175
• FlyBaseID: FBgn0025630
• Length: 361
• Species: Drosophila melanogaster
• Sequence 2: NP_014633.1
• Gene: RCL1 / 854152
• SGDID: S000005370
• Length: 367
• Species: Saccharomyces cerevisiae
• Alignment Length: 374
• Identity: 88/374 - (23%)
• Similarity: 154/374 - (41%)
• Gaps: 57/374 - (15%)

  Fly    17 GGQALRNALSLSCILGKPVRVVKIRASRPSPGLSHQHLHGLNLLRDITNADVVGNYLLSSTVEFT 81
            |.|..|..:.|:.:.|||:::.|||:...:|||....:..|.|:..:||..|:......:||.:.
Yeast    13 GSQNFRLRIVLATLSGKPIKIEKIRSGDLNPGLKDYEVSFLRLIESVTNGSVIEISYTGTTVIYR 77

  Fly    82 PRTILDNTYRVETHTAASITLIYQMALPVLL---FAGRPSRLIVSGGTNVDFAPPVEYMQEVLLP 143
            |..|:..   ..||...|...:.....|:|.   |:.:...::..|.|.......:|.::..|:|
Yeast    78 PGIIVGG---ASTHICPSSKPVGYFVEPMLYLAPFSKKKFSILFKGITASHNDAGIEAIKWGLMP 139

  Fly   144 NLKHFGV-SFDLKVQRYGFYPRGQGRCQLDV-----QPVTKLNSGKLVAFGRIKSVSGVAYCAGR 202
            .::.||| ...|...:.|..|.|.|...|.|     ||:|.....:.:    |.|::||||....
Yeast   140 VMEKFGVRECALHTLKRGSPPLGGGEVHLVVDSLIAQPITMHEIDRPI----ISSITGVAYSTRV 200

  Fly   203 LP--VNIAID----MQQTAQREIH---RLWPSQQCSIEP------IKHSRQKAFHNGAGILMTVN 252
            .|  ||..||    :.:..|.|::   .:|..:.....|      :..|:||.:          :
Yeast   201 SPSLVNRMIDGAKKVLKNLQCEVNITADVWRGENSGKSPGWGITLVAQSKQKGW----------S 255

  Fly   253 TTSDVVLGASALGKKRIDGHVLGSEASCQLGDYMRKQVCVDDYMQDQLIIYMALA---VGRSTMR 314
            ..::.:..|.::.::      ||.:.:|||.:.:.|...|........|:||.:.   :||  :|
Yeast   256 YFAEDIGDAGSIPEE------LGEKVACQLLEEISKSAAVGRNQLPLAIVYMVIGKEDIGR--LR 312

  Fly   315 TGKLTNHTRTAINVAEQMTGVKFDVAMEP-----GGQMLVSCKGLGHVN 358
            ..|.....|..|.:.:.......:|.::|     ...|:.:.||:|..|
Yeast   313 INKEQIDERFIILLRDIKKIFNTEVFLKPVDEADNEDMIATIKGIGFTN 361

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rtca	NP_569977.1	RNA_3prim_cycl	7..338	CDD:274563	81/347 (23%)
RCL1	NP_014633.1	18S_RNA_Rcl1p	10..367	CDD:274564	88/374 (24%)