Protein Alignment Rtca and Rcl1

DIOPT Version :10

• Sequence 1: NP_569977.1
• Gene: Rtca / 31175
• FlyBaseID: FBgn0025630
• Length: 361
• Species: Drosophila melanogaster
• Sequence 2: NP_067500.1
• Gene: Rcl1 / 59028
• MGIID: 1913275
• Length: 373
• Species: Mus musculus
• Alignment Length: 367
• Identity: 97/367 - (26%)
• Similarity: 161/367 - (43%)
• Gaps: 28/367 - (7%)

  Fly    12 SYLEGGGQALRNALSLSCILGKPVRVVKIRASRPSPGLSHQHLHGLNLLRDITNADVVGNYLLSS 76
            ||  .|...||..|.||.:.|:||::.:|||...:|||.......:.||..|||...:......:
Mouse     9 SY--AGCNFLRQRLVLSTLSGRPVKIRRIRARDDNPGLRDFEASFIRLLDKITNGSRIEINQTGT 71

  Fly    77 TVEFTPRTILDNTYRVETHTAASITLIYQMALPVLLFAGRPSRLIVSGGTNVDFAPPVEYMQEVL 141
            |:.:.|..:...:...:......|....:..|.:..|...|.::::.|.||....|.|:.::...
Mouse    72 TLYYQPGLLYGGSVEHDCSVLRGIGYYLEALLCLAPFMKHPLKIVLRGVTNDQVDPSVDVLKATA 136

  Fly   142 LPNLKHFGV---SFDLKVQRYGFYPRGQGRCQLDVQPVTK-LNSGKLVAFGRIKSVSGVAYCAGR 202
            ||.||.||:   ||:||:.|.|..|.|.|...... ||.| |...:|...|:||.:.|:||.. |
Mouse   137 LPLLKQFGIDGESFELKILRRGMPPGGGGEVLFSC-PVRKVLKPVQLTDPGKIKRIRGMAYSV-R 199

  Fly   203 LPVNIAIDMQQTAQREIHRLWPSQQCSIEPIKH-SRQKAFHNGAGILMTVNTTSDVVLGASALGK 266
            :...:|..:..:|:..:::..|......:.:|. |..|:  .|.|:.:...||:...|.|.....
Mouse   200 VSPQMANRIVDSARSILNKFIPDIYIYTDHMKGVSSGKS--PGFGLSLVAETTNGTFLSAELASN 262

  Fly   267 KRIDGHV-----LGSEASCQLGDYMRKQVCVDDYMQDQLIIYMALAVGR---STMRTGKLTNHTR 323
            .:..|..     ||...:..|.:.:.:..|||...|..:::.|.|  |:   |.:..|.|:.:|.
Mouse   263 PQGQGAAVLPEDLGRNCAKLLLEEIYRGGCVDSTNQSLVLLLMTL--GQQDVSKVLLGPLSPYTI 325

  Fly   324 TAINVAEQMTGVKFDVAMEP-------GGQMLVSCKGLGHVN 358
            ..:...:....|.|.|..:|       |.::|::|.|:|..|
Mouse   326 EFLRHLKSFFQVMFKVETKPCGEELKGGDKVLMTCVGIGFSN 367

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rtca	NP_569977.1	RNA_3prim_cycl	7..338	CDD:274563	88/338 (26%)
Rcl1	NP_067500.1	18S_RNA_Rcl1p	8..371	CDD:274564	97/367 (26%)