Protein Alignment Rtca and Rtc1

DIOPT Version :10

• Sequence 1: NP_569977.1
• Gene: Rtca / 31175
• FlyBaseID: FBgn0025630
• Length: 361
• Species: Drosophila melanogaster
• Sequence 2: NP_572919.1
• Gene: Rtc1 / 32338
• FlyBaseID: FBgn0020909
• Length: 384
• Species: Drosophila melanogaster
• Alignment Length: 380
• Identity: 93/380 - (24%)
• Similarity: 150/380 - (39%)
• Gaps: 54/380 - (14%)

  Fly    17 GGQALRNALSLSCILGKPVRVVKIRA-SRPSPGLSHQHLHGLNLLRDITNADVVGNYLLSSTVEF 80
            |...|:..|.|:|:.||||::.:||: ...:|||....:..:.||..|||...:......::|.|
  Fly    15 GSNFLKQRLILACLSGKPVKISQIRSEDETAPGLREYEISLIRLLDKITNGTKIELNPAGTSVMF 79

  Fly    81 TPRTILDNTYRVETHTAASITLIYQMALPVLLFAGRPSRLIVSGGTNVDFAPPVEYMQEVLLPNL 145
            :|..:.......:......|.......:.:..|...|.:..:.|.||...:|.|::::...|..|
  Fly    80 SPGLLHGGQLNHDCCVQRGIGYYLDALIALGPFCKSPLQCTLRGVTNSKDSPSVDHIKGAALSLL 144

  Fly   146 KHF---GVSFDLKVQRYGFYPRGQG----RCQLDVQPVTK-LNSGKLVAFGRIKSVSGVAYCAGR 202
            |.|   ....:|||.|.|..|.|.|    ||     ||.| |.:.:..:.|.:|.:.|..|....
  Fly   145 KRFLLVDEGLELKVVRRGVAPLGGGEIIFRC-----PVRKSLRAIQFQSQGMVKRIRGTVYACKV 204

  Fly   203 LPVNIAIDMQQTAQREIHRLWPSQQCSIEPI-------KHSRQKAFHN--GAGILMTVNTTSDVV 258
            .|.        .|.|.:.   .::.|.::.:       ..::.|...|  |.||.:...||..|.
  Fly   205 SPA--------MANRTVE---AAKGCMLKFLPDVYIYTDQNKGKMSGNSPGFGICLIAETTDGVC 258

  Fly   259 LGASALGKKRIDG-------HVLGSEASCQLGDYMRKQVCVDDYMQDQLIIYMALAVGR-STMRT 315
            ..|......|.:.       ..||.|.:.:|.|.:.:..|||...|....:|:||.... |...|
  Fly   259 FAADCCSNTREESEDTPSIPENLGKEVALRLLDEIYRGGCVDSSYQWLAALYIALGQKHVSKFLT 323

  Fly   316 GKLTNHTRTAINVAEQMTGVKF----------DVAMEPGG--QMLVSCKGLGHVN 358
            |.|:|:|...:........:.|          |.|....|  ::|::|.|:|:.|
  Fly   324 GALSNYTVHFLQHLRDFFSITFKLENPEAEDEDEAENVRGAQKVLMACVGIGYTN 378

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rtca	NP_569977.1	RNA_3prim_cycl	7..338	CDD:274563	85/356 (24%)
Rtc1	NP_572919.1	18S_RNA_Rcl1p	11..384	CDD:274564	93/380 (24%)