Protein Alignment Rtca and ZK1127.5

DIOPT Version :10

• Sequence 1: NP_569977.1
• Gene: Rtca / 31175
• FlyBaseID: FBgn0025630
• Length: 361
• Species: Drosophila melanogaster
• Sequence 2: NP_495445.2
• Gene: ZK1127.5 / 174151
• WormBaseID: WBGene00022852
• Length: 379
• Species: Caenorhabditis elegans
• Alignment Length: 371
• Identity: 82/371 - (22%)
• Similarity: 144/371 - (38%)
• Gaps: 28/371 - (7%)

  Fly    17 GGQALRNALSLSCILGKPVRVVKIRASRPSPGLSHQHLHGLNLLRDITNADVVGNYLLSSTVEFT 81
            |....|..|:.|.:.|:|:|::.||.:...||:.......:.||..:||...|......:.|.|.
 Worm    10 GCNFFRIRLAYSILSGRPIRIINIRKNDDRPGIRDFESKLIGLLEKVTNGTKVEISRTGTQVIFR 74

  Fly    82 PRTILDNTYRVETHTAASITLIYQMALPVLLFAGRPSRLIVSGGTNVDFAPPVEYMQEVLLPNLK 146
            |..|......::..|...|:...:..|.:..|...|..:.:.|.||......|:.|:...|....
 Worm    75 PGMITGGVVNLDCGTERCISYFLEPLLLLSPFCKVPMVIKLKGVTNAPGEISVDGMKASWLKVYN 139

  Fly   147 HFGVS---FDLKVQRYGFYPRGQGRCQLDVQPVTKLNSGKLVAFGRIKSVSGVAYCAGRLPVNIA 208
            .|.::   .|:|:|..|..|.|.|........|..|...|....|::..:.|.||.....| ::|
 Worm   140 KFVLNDEKLDIKIQARGLKPEGGGVVVFTAPIVKTLRPVKRQQVGKVCKIRGQAYVTKVTP-SLA 203

  Fly   209 IDMQQTAQREIHRLWPSQQCSIEPIKHSRQKAFHNGAGILMTVNTTSDVVLGASALGKKRIDGHV 273
            ..|...|::.:|........:::..|.....| ..|.|:.:|..||..|:..|.|:.:.:.:..|
 Worm   204 YRMIDAAKKAMHGYISDVYITVDQRKGDAGGA-SPGYGLFLTAETTEGVIYQAEAISRPKGESGV 267

  Fly   274 --LGSEASCQLGDYMRKQV----CVDDYMQDQLIIYMALA-VGRSTMRTGKLTNHTRTAINVAEQ 331
              |..:...:.|..:.:|:    .:|...|.....:|.|. ...|....|.|..::..|:...:|
 Worm   268 PILPEDIGIEAGHALLQQIYMGGALDSSAQILASTFMTLCPKDVSHFLYGPLPMYSVHALRHLKQ 332

  Fly   332 MTGVKF--------------DVAMEPGGQMLVSCKGLGH--VNKLI 361
            ...::|              |:......:.:|:..|:|:  :||.|
 Worm   333 FFEIEFKMEDFKKTLKEEEADLKTGSADKAMVTAVGVGYSNLNKTI 378

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rtca	NP_569977.1	RNA_3prim_cycl	7..338	CDD:274563	75/344 (22%)
ZK1127.5	NP_495445.2	18S_RNA_Rcl1p	6..378	CDD:274564	81/369 (22%)