Protein Alignment Rtca and Rtc1

DIOPT Version :10

• Sequence 1: NP_569977.1
• Gene: Rtca / 31175
• FlyBaseID: FBgn0025630
• Length: 361
• Species: Drosophila melanogaster
• Sequence 2: XP_314471.3
• Gene: Rtc1 / 1275239
• VectorBaseID: AGAMI1_008819
• Length: 389
• Species: Anopheles gambiae
• Alignment Length: 385
• Identity: 95/385 - (24%)
• Similarity: 160/385 - (41%)
• Gaps: 47/385 - (12%)

  Fly    11 GSYLEGGGQALRNALSLSCILGKPVRVVKIRA-SRPSPGLSHQHLHGLNLLRDITNADVVGNYLL 74
            |..:..|...|:..|.||.:.||.:.|.:||. ...:|||.....:.|.||..|||..:......
Mosquito     9 GCLIYEGSNFLKQRLLLSTLSGKSIEVREIRPHHETNPGLQEYETNLLQLLDKITNGTITRVDRD 73

  Fly    75 SSTVEFTPRTILDNTYRVETHTAASITLIYQMALPVLLFAGRPSRLIVSGGTNVDFAPPVEYMQE 139
            ..:..:.|..:.......:..|...|.....:.:.:..|..:|..:.::|.||...:|.|::::.
Mosquito    74 GCSFVYQPGLLYGGVIHHDCSTERGIGYYLDVLVALGPFCKKPLDVTLTGVTNSKESPSVDHIKA 138

  Fly   140 VLLPNLKHFGV---SFDLKVQRYGFYPRGQG----RCQLDVQPVTK-LNSGKLVAFGRIKSVSGV 196
            ..||.||.|.|   ..:|||.:.|..|.|.|    ||     ||.| |.:.:......:|.:.|.
Mosquito   139 SALPALKRFLVVDEGLELKVLKRGIMPGGGGEITFRC-----PVRKSLKAIQCTKQTMVKRIRGT 198

  Fly   197 AYCAGRLP--VNIAIDMQQTAQREIHRLWPSQQCSIEPIKHSRQKAFHN-GAGILMTVNTTSDVV 258
            |||....|  .|.|:   :.|:..:....|....:.:  :|..:::.:: |.||.:...||...:
Mosquito   199 AYCCKVSPAMANRAV---EHAKGVMLNFLPDVYINTD--QHKGKRSGNSPGYGINLVAETTDGTM 258

  Fly   259 LGASALGKKRID--GHV-----LGSEASCQLGDYMRKQVCVDDYMQDQLIIYMALA--------V 308
            ..|.|:.|...:  |:.     ||.||..:|.|.:.:..|||...|..:::|||||        :
Mosquito   259 FSAEAICKTMDEQQGNPSIPEDLGREAGMKLLDEVFRGGCVDSAFQWLVVLYMALAQKDVSKFLI 323

  Fly   309 GRSTMRTGKLTNHTRTAINVA----------EQMTGVKFDVAMEPGGQMLVSCKGLGHVN 358
            |..:..|.....|.|....:.          |..|..:.|..:....:::::|.|:|:.|
Mosquito   324 GPLSQYTIHFLQHLREFFAITFKLENANGDQEDETAGRDDEELSGSNKVMLTCVGVGYSN 383

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rtca	NP_569977.1	RNA_3prim_cycl	7..338	CDD:274563	90/363 (25%)
Rtc1	XP_314471.3	None