DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rtca and RCL1

DIOPT Version :10

Sequence 1:NP_569977.1 Gene:Rtca / 31175 FlyBaseID:FBgn0025630 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_005763.3 Gene:RCL1 / 10171 HGNCID:17687 Length:373 Species:Homo sapiens


Alignment Length:40 Identity:13/40 - (32%)
Similarity:17/40 - (42%) Gaps:2/40 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 PMGGMGGMSPYGGGMSPYGMGSMGGMGSS--MSFPFMGKK 121
            |..|.|.::..||..|..|....||.|.:  .||...|.:
Human   383 PSRGAGSVTRGGGAQSQRGTPGAGGAGRARGSSFTKFGNR 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RtcaNP_569977.1 RNA_3prim_cycl 7..338 CDD:274563 13/40 (33%)
RCL1NP_005763.3 18S_RNA_Rcl1p 8..371 CDD:274564
Blue background indicates that the domain is not in the aligned region.

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